Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060187.seq
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53180-5|AAA96287.3|  295|Caenorhabditis elegans Hypothetical pr...    96   2e-20
AF077544-5|AAK39240.1|  398|Caenorhabditis elegans Aspartyl prot...    29   2.7  
AC024776-9|AAK68462.1|  244|Caenorhabditis elegans Set (trithora...    29   2.7  
Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL132898-17|CAB60957.2|  299|Caenorhabditis elegans Hypothetical...    28   6.3  

>U53180-5|AAA96287.3|  295|Caenorhabditis elegans Hypothetical
           protein D1014.3 protein.
          Length = 295

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 49/125 (39%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
 Frame = +2

Query: 251 QVAKKWPQAGQAFCNAAQLHLKAG-VRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIY 427
           ++AK W  AG AF  AA+ + K G  +HD AT + +A+NC++K     AV CL K  EIY
Sbjct: 51  KMAKNWQAAGDAFLEAAEFYAKNGDSKHDCATQYAEAANCFRKIQPERAVQCLEKTSEIY 110

Query: 428 TDMGRFTVAAKQHQNIAECTRRSALXXXXXXXXXXXXXXXXXXXXXXXXXNKCMLKLAHY 607
           TDMGRFT+AAK H +IAE                                +KC++K+A Y
Sbjct: 111 TDMGRFTMAAKNHVSIAELYETELPDKEQCVKHYQQAADYYKGEEQKSSASKCLVKVAMY 170

Query: 608 AAQLE 622
           +A+LE
Sbjct: 171 SAELE 175



 Score = 30.7 bits (66), Expect = 0.90
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 102 MADNEQKAMQLMAEAEXXXXXXXXXXXXXXXXXXXIEEAVDCYLRAANLFKWPRS 266
           M+DNE KA Q MAE                       EA D +++  NLFK  ++
Sbjct: 1   MSDNEAKARQKMAEGRKKLSGGGGFLNRMFGGGGSNAEAADLFIQGGNLFKMAKN 55


>AF077544-5|AAK39240.1|  398|Caenorhabditis elegans Aspartyl
           protease protein 3 protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -1

Query: 442 TTHIGVDLDRFQETGHGLVSITFLVTVRSIYKIGGSIMANTSFQVELCCITESLPCLRPL 263
           TT+    +D   +TG  L++    V  +  +KIGG  + N  ++VE C    SLP +   
Sbjct: 267 TTYTSGPIDSIVDTGTSLLTGPTDVIKKIQHKIGGIPLFNGEYEVE-CSKIPSLPNITFN 325

Query: 262 LGHLN 248
           LG  N
Sbjct: 326 LGGQN 330


>AC024776-9|AAK68462.1|  244|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 23,
           isoform a protein.
          Length = 244

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 320 GVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMGRFTVAAKQHQNIAECTRRSA 499
           G+      +  +  NC  +C +    SCL+  I+ YT  G+     K  + + EC+ + A
Sbjct: 14  GISETDWNDVFEGCNCEAECSSAAGCSCLINKIDNYTVDGKIN---KSSELLIECSDQCA 70


>Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical
           protein F19C6.1 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 421 DLHRYGSFHCGCQTTPEHCGVYETEC 498
           D   YG F+ GC + P    + ETEC
Sbjct: 526 DTQFYGKFNTGCVSIPWQSEMIETEC 551


>AL132898-17|CAB60957.2|  299|Caenorhabditis elegans Hypothetical
           protein Y59A8B.8 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 335 AATNFVDASNCYKKC-DANEAVSCLLKAIEIYTDMGRFTVAAKQHQNIAECTR 490
           AA+    AS CY+   D  +A   LLKA E Y        AAK  +  A   R
Sbjct: 37  AASAMERASVCYRNAQDPKKAAGSLLKAAEYYEQNRNLFHAAKAREGAAMLLR 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,438,656
Number of Sequences: 27780
Number of extensions: 228634
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)