SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060187.seq
         (631 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56190.1 68416.m06245 alpha-soluble NSF attachment protein 2 ...    94   6e-20
At4g21230.1 68417.m03070 protein kinase family protein contains ...    29   1.9  
At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 ...    29   2.5  
At5g41390.1 68418.m05029 hypothetical protein contains 1 predict...    28   4.4  
At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containi...    28   4.4  
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c...    28   5.9  
At3g23020.1 68416.m02902 pentatricopeptide (PPR) repeat-containi...    28   5.9  

>At3g56190.1 68416.m06245 alpha-soluble NSF attachment protein 2 /
           alpha-SNAP2 / ASNAP2 identical to alpha-soluble NSF
           attachment protein 2 / alpha-SNAP2 SP:Q9SPE6 from
           [Arabidopsis thaliana]
          Length = 289

 Score = 94.3 bits (224), Expect = 6e-20
 Identities = 48/124 (38%), Positives = 68/124 (54%)
 Frame = +2

Query: 251 QVAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYT 430
           ++AK W QAG+A+   A  HLK+  +HDAA  + +A+ CYKK D NEA SCL +A+ I+ 
Sbjct: 44  KLAKSWDQAGKAYLKLADCHLKSDSKHDAANAYAEAAKCYKKVDTNEAASCLERAVNIFC 103

Query: 431 DMGRFTVAAKQHQNIAECTRRSALXXXXXXXXXXXXXXXXXXXXXXXXXNKCMLKLAHYA 610
           ++GR  +AA+ ++ IAE    S                           N+C LK+A YA
Sbjct: 104 EIGRLNMAARYYKEIAE-YYESDQKFEQAIAYFEKAAEFFQNEEVTTSANQCNLKVAQYA 162

Query: 611 AQLE 622
           AQLE
Sbjct: 163 AQLE 166


>At4g21230.1 68417.m03070 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 642

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 370 VTVRSI-YKIGGSIMANTSFQVELCCITESLPCLRPLL 260
           VTV +I Y  GG+  +NTS+ + L  +  SLP L P +
Sbjct: 28  VTVHTICYYDGGNFTSNTSYSLNLNRLISSLPDLTPTI 65


>At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 /
           alpha-SNAP1 (ASNAP1) identical to alpha-soluble NSF
           attachment protein 1 (Alpha-SNAP1) (N-
           ethylmaleimide-sensitive factor attachment protein,
           alpha 1) (Swiss-Prot:Q9LXZ5) [Arabidopsis thaliana]
          Length = 381

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 251 QVAKKWPQAGQAFCNAAQLHLKA 319
           ++AK W QAG A+   A  HLKA
Sbjct: 132 KLAKSWDQAGIAYLKLADCHLKA 154


>At5g41390.1 68418.m05029 hypothetical protein contains 1 predicted
           transmembrane domain;
          Length = 297

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 353 DASNCYKKCDANEAVSCLLKAIEIYTDMGRFT 448
           D   C+  C     VS LL+   +Y DM R+T
Sbjct: 32  DTPYCFFSCLCGPCVSYLLRKRALYNDMSRYT 63


>At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 685

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +2

Query: 305 LHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMGRFTVAAKQHQNIAE 481
           L LKA  R  +    +D  +   KC  N  V+ +   + IY+  GR   A K    I +
Sbjct: 116 LVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPD 174


>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
            contains Pfam PF02138: Beige/BEACH domain; similar to LBA
            isoform gamma (GI:10257405) [Mus musculus]; similar to
            beige-like protein (CDC4L) - Homo sapiens; similar to
            Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
            protein homolog implicated in neuronal membrane traffic
            (AKAP550) (GI:11863541) [Drosophila melanogaster].
          Length = 1928

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 335  HHGEHQLSSGAVLHY 291
            H+G H  S+GAVLHY
Sbjct: 1755 HYGSHYSSAGAVLHY 1769


>At3g23020.1 68416.m02902 pentatricopeptide (PPR) repeat-containing
           protein low similarity to leaf protein [Ipomoea nil]
           GI:3107905; contains Pfam profile PF01535: PPR repeat
          Length = 842

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 496 TPSRTLRNVLVLFGSHSETTHIG-VDLDRFQETGHGLVSITFLVTVRSIYKIGGSIMANT 320
           TP +   N LV   + ++  H G   L++ +ETG+    I +   + S  K+G   MA  
Sbjct: 537 TPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEE 596

Query: 319 SFQ 311
            ++
Sbjct: 597 VYK 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,722,844
Number of Sequences: 28952
Number of extensions: 212508
Number of successful extensions: 538
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -