Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060186.seq
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47462| Best HMM Match : Ras (HMM E-Value=0)                         73   2e-13
SB_1071| Best HMM Match : Ras (HMM E-Value=0)                          44   7e-05
SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          41   8e-04
SB_24106| Best HMM Match : Ras (HMM E-Value=1e-35)                     37   0.010
SB_45967| Best HMM Match : Ras (HMM E-Value=2.1e-07)                   35   0.053
SB_5178| Best HMM Match : Ras (HMM E-Value=9e-10)                      35   0.053
SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)       33   0.22 
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.38 
SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19)                   30   1.1  
SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12)                   30   1.5  
SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21)                   29   2.6  
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)                   28   4.6  
SB_51639| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
          Length = 385

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 36/73 (49%), Positives = 43/73 (58%)
 Frame = +3

Query: 312 MREFXXXXXXXXXXXXXALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLG 491
           M+E+             ALTVQF +G F+EKYDPT EDFYRK I VDN+P + +     G
Sbjct: 1   MKEYKVVVLGSGGVGKSALTVQFVTGQFVEKYDPTIEDFYRKEIEVDNNPSILEILDTAG 60

Query: 492 TEQXCLMRDLVYK 530
           TEQ   MRDL  K
Sbjct: 61  TEQFASMRDLYIK 73


>SB_1071| Best HMM Match : Ras (HMM E-Value=0)
          Length = 228

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 20/40 (50%), Positives = 24/40 (60%)
 Frame = +3

Query: 312 MREFXXXXXXXXXXXXXALTVQFXSGXFMEKYDPTXEDFY 431
           M+E+             ALTVQF +G F+EKYDPT EDFY
Sbjct: 1   MKEYKVVVLGSGGVGKSALTVQFVTGQFVEKYDPTIEDFY 40


>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = +3

Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLGTEQXCLMRD 518
           ALT+QF    F+  YDPT ED YRK   +D            G E+   MR+
Sbjct: 26  ALTIQFIQSHFVSDYDPTIEDSYRKQCVIDERVAHLDILDTAGQEEFSAMRE 77


>SB_24106| Best HMM Match : Ras (HMM E-Value=1e-35)
          Length = 263

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +3

Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDN 455
           AL V+F    F+ +YDPT ED YRK I +D+
Sbjct: 20  ALLVRFLCHRFLGEYDPTIEDKYRKSINIDD 50


>SB_45967| Best HMM Match : Ras (HMM E-Value=2.1e-07)
          Length = 92

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGI 443
           +LT+QF  G F++ YDPT E+ + K I
Sbjct: 21  SLTIQFVEGQFVDSYDPTIENTFTKNI 47


>SB_5178| Best HMM Match : Ras (HMM E-Value=9e-10)
          Length = 166

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLGTEQXCLMRDLVYKKWS 539
           ++  +F  G F E+Y+PT ED Y K +  + S  V       G+ Q   MR++  K+ S
Sbjct: 23  SIVKRFYCGKFSEEYEPTVEDCYSKVLNKNGSIMVLNTTDSSGSYQFPAMREVAIKRAS 81


>SB_37884| Best HMM Match : Ubie_methyltran (HMM E-Value=0.00014)
          Length = 399

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = -2

Query: 427 KSSXVGSYFSIXHPDXNCTVNALF 356
           KSS VGSYFS   P  NC VNA F
Sbjct: 1   KSSIVGSYFSTNCPVTNCKVNADF 24


>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1288

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 269 VIETYHTVRYKMSLLCWFMTHSDAITELHLLKLIDKHRRHFSSM*IKITPTA 114
           ++E    +R K S +  + THSD ITE+ + K      +  S + IK+ P A
Sbjct: 181 ILEELVVLRKKRSDILGYATHSDYITEMRMSKSAANVSKFLSDLAIKLHPLA 232


>SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19)
          Length = 351

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGI 443
           +L  +F SG F E+Y PT  D Y K +
Sbjct: 122 SLVKRFISGTFSEQYTPTVGDLYEKSV 148


>SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12)
          Length = 460

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDN 455
           ALTV+F +  F+ +YD T E  +R  + +DN
Sbjct: 31  ALTVRFLTRRFIGEYDQTLESTHRHILQIDN 61


>SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21)
          Length = 242

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = +3

Query: 306 TIMREFXXXXXXXXXXXXXALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTP 485
           T +R F             +L ++F    F + Y PT EDF+ K +  +N     +    
Sbjct: 24  TSLRRFTIVFFGASSVGKTSLILRFLGYAFNDDYSPTIEDFFIKHVFFNNETYELQIIDT 83

Query: 486 LGTEQXCLMR 515
            GT +   MR
Sbjct: 84  SGTYEFPAMR 93


>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
          Length = 965

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXV 449
           ALTV+F +  F+ +YD T E  YR+   V
Sbjct: 876 ALTVRFLTKRFIGEYDDTLESTYRQDAEV 904


>SB_51639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 528 YIPDL-ASSKXAXCQAVSKISKHKENCPLRFLFCRNP 421
           YI D+    +    Q   K  K K+N PL F+F R P
Sbjct: 69  YIDDIRGDQERKYAQKRDKEGKKKKNSPLSFVFARTP 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,269
Number of Sequences: 59808
Number of extensions: 296460
Number of successful extensions: 443
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)