Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060186.seq
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical p... 71 6e-13
Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical pr... 67 9e-12
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 51 5e-07
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 50 9e-07
AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-rela... 44 6e-05
Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical p... 44 1e-04
U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding pro... 44 1e-04
U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog ... 44 1e-04
CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical ... 44 1e-04
CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical pr... 36 0.027
U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding pro... 36 0.027
AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical ... 28 4.1
Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr... 28 5.4
L16559-10|AAA27927.1| 371|Caenorhabditis elegans Hypothetical p... 27 9.4
>Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical
protein C25D7.7 protein.
Length = 181
Score = 70.9 bits (166), Expect = 6e-13
Identities = 38/73 (52%), Positives = 40/73 (54%)
Frame = +3
Query: 312 MREFXXXXXXXXXXXXXALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLG 491
MREF ALTVQF S F+EKYDPT EDFYRK I VD P V + G
Sbjct: 1 MREFKVVVLGSGGVGKSALTVQFVSSTFIEKYDPTIEDFYRKEIEVDGQPSVLEILDTAG 60
Query: 492 TEQXCLMRDLVYK 530
TEQ MRDL K
Sbjct: 61 TEQFSSMRDLYIK 73
>Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical
protein C27B7.8 protein.
Length = 188
Score = 66.9 bits (156), Expect = 9e-12
Identities = 34/73 (46%), Positives = 39/73 (53%)
Frame = +3
Query: 312 MREFXXXXXXXXXXXXXALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLG 491
MRE+ ALTVQF G F+EKYDPT ED YRK + VD C+ + G
Sbjct: 1 MREYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
Query: 492 TEQXCLMRDLVYK 530
TEQ MRDL K
Sbjct: 61 TEQFTAMRDLYMK 73
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 51.2 bits (117), Expect = 5e-07
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = +3
Query: 309 IMREFXXXXXXXXXXXXXALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPL 488
+M E+ ALT+Q F+E+YDPT ED YRK + +D C+
Sbjct: 3 VMTEYKLVVVGDGGVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVVIDGETCLLDILDTA 62
Query: 489 GTEQXCLMRD 518
G E+ MRD
Sbjct: 63 GQEEYSAMRD 72
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 50.4 bits (115), Expect = 9e-07
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = +3
Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLGTEQXCLMRD 518
ALT+Q F+E+YDPT ED YRK + +D C+ G E+ MRD
Sbjct: 18 ALTIQLIQNHFVEEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD 69
>AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-related
gtpase) homologprotein 1 protein.
Length = 213
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLGTEQXCLMRDLVYK 530
ALT+QF F+E+Y+PT D YRK + +D C G E +RD Y+
Sbjct: 32 ALTLQFMYDEFVEEYEPTKADSYRKKVVLDGEECSIDILDTAGQEDYSAIRDNYYR 87
>Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical
protein C08F8.7 protein.
Length = 205
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/73 (34%), Positives = 33/73 (45%)
Frame = +3
Query: 312 MREFXXXXXXXXXXXXXALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLG 491
M+E+ ALT+Q+ G F+ YD T ED YRK VD + G
Sbjct: 1 MKEYKIVVLGNGGVGKSALTLQYVQGIFVHTYDATIEDSYRKLSKVDAENARLEILDTAG 60
Query: 492 TEQXCLMRDLVYK 530
TEQ MR+ Y+
Sbjct: 61 TEQFTGMRETYYR 73
>U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding
protein protein.
Length = 212
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLGTEQXCLMRD 518
ALT+QF F++ YDPT ED Y K VD C + G E+ MR+
Sbjct: 32 ALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQEEFSTMRE 83
>U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog
protein.
Length = 212
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLGTEQXCLMRD 518
ALT+QF F++ YDPT ED Y K VD C + G E+ MR+
Sbjct: 32 ALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQEEFSTMRE 83
>CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical
protein C44C11.1b protein.
Length = 168
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLGTEQXCLMRD 518
ALT+QF F++ YDPT ED Y K VD C + G E+ MR+
Sbjct: 32 ALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQEEFSTMRE 83
>CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical
protein C44C11.1a protein.
Length = 212
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +3
Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLGTEQXCLMRD 518
ALT+QF F++ YDPT ED Y K VD C + G E+ MR+
Sbjct: 32 ALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEILDTAGQEEFSTMRE 83
>Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical
protein F17C8.4 protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.027
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLGTEQXCLMRD 518
+LT+QF F++ YDPT ED Y + +D + + G E+ MR+
Sbjct: 32 SLTIQFFQKQFVDYYDPTIEDQYIQHCEIDGNWVIMDVLDTAGQEEFSAMRE 83
>U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding
protein protein.
Length = 211
Score = 35.5 bits (78), Expect = 0.027
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 363 ALTVQFXSGXFMEKYDPTXEDFYRKGIXVDNSPCV*KFWTPLGTEQXCLMRD 518
+LT+QF F++ YDPT ED Y + +D + + G E+ MR+
Sbjct: 32 SLTIQFFQKQFVDYYDPTIEDQYIQHCEIDGNWVIMDVLDTAGQEEFSAMRE 83
>AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical
protein Y26E6A.1 protein.
Length = 449
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -1
Query: 353 DPTRTQHDHFKFAHYCAP*ITXASLPHNVIETY--HTVRYKMSLLCWFMTHSDAITELHL 180
+P R +H CA + A +P+ + Y H + + +++ F + E L
Sbjct: 244 NPERLEHMECAGCITCAEHLLGACMPNMQRDVYQIHANKIEKTVMAHFEQFLELTKEDGL 303
Query: 179 LKLIDKHRRHFSSM 138
++I KH HF S+
Sbjct: 304 GEIISKHTAHFDSI 317
>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical protein
F59F3.5 protein.
Length = 1199
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 254 HTVRYKMSLLCWFMTHSDAITELHLLKLIDKHRRHFSS 141
H YK+ +CW + D T +KL H ++F+S
Sbjct: 1130 HKDVYKIMKMCWQASPDDRPTFAECIKLFKNHIQYFAS 1167
>L16559-10|AAA27927.1| 371|Caenorhabditis elegans Hypothetical
protein C06E1.11 protein.
Length = 371
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 29 CSCGTKLVLITSVEWKLCSAFVFKVISAMQLELF*FTWN*NGVGVY 166
CSC ++VL KLC+ K+ S Q + F +G V+
Sbjct: 177 CSCQLQIVLSNDAATKLCAILAEKIQSPSQTSNYAFNSYLSGAAVH 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,303,780
Number of Sequences: 27780
Number of extensions: 223387
Number of successful extensions: 370
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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