Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060186.seq
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40050.1 68415.m04921 DC1 domain-containing protein contains ...    28   5.0  
At4g10400.1 68417.m01707 F-box family protein contains F-box dom...    27   6.6  
At1g05085.1 68414.m00511 hypothetical protein                          27   8.7  

>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 224 CWFMTHSDAITELHLLKLIDKHRRHFS 144
           C F+TH+D +   H++K I +HR   S
Sbjct: 230 CNFVTHNDCMNSPHIIK-ISRHRHRIS 255


>At4g10400.1 68417.m01707 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 409

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 245 RYKMSLLCWFMTHSDAITELHLLKLIDKH 159
           +Y  +LL WF+ +S  + EL L+   D H
Sbjct: 295 KYSSNLLVWFLKNSPNLRELMLVSETDDH 323


>At1g05085.1 68414.m00511 hypothetical protein
          Length = 124

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 62  SVEWKLCS-AFVFKVISAMQLELF*FTWN*NGVGVYQL--TLVNVTQ*SHP 205
           SVE K  S  F+F ++S  QL +F  TWN  GV  Y L    +N T   HP
Sbjct: 57  SVERKSKSRGFIFCLLSRSQLWMFHPTWNLEGVLQYFLFKFTINGTCLLHP 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,406,280
Number of Sequences: 28952
Number of extensions: 198806
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)