Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060185.seq
         (668 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KXJ4 Cluster: Putative uncharacterized protein SCO232...    36   0.88 
UniRef50_Q83GC3 Cluster: Putative uncharacterized protein; n=2; ...    34   3.6  
UniRef50_Q6KGV2 Cluster: Putative RIIA; n=1; Enterobacteria phag...    34   3.6  
UniRef50_Q9SMQ5 Cluster: Proliferating-cell nucleolar antigen-li...    33   4.7  
UniRef50_UPI00003829AC Cluster: hypothetical protein Magn0300183...    33   6.2  
UniRef50_Q8PVP4 Cluster: Putative uncharacterized protein; n=1; ...    33   6.2  
UniRef50_Q6BLS6 Cluster: Similar to ca|CA3078|IPF19970 Candida a...    33   8.2  

>UniRef50_Q9KXJ4 Cluster: Putative uncharacterized protein SCO2326;
           n=2; Streptomyces|Rep: Putative uncharacterized protein
           SCO2326 - Streptomyces coelicolor
          Length = 154

 Score = 35.9 bits (79), Expect = 0.88
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 267 WKVDQESQAEWGLLLWQERIDTTC-SWNFW 353
           WK +  +Q EWGL   ++R  +TC +W FW
Sbjct: 119 WKTNAATQIEWGLDYMKDRYGSTCDAWTFW 148


>UniRef50_Q83GC3 Cluster: Putative uncharacterized protein; n=2;
           Tropheryma whipplei|Rep: Putative uncharacterized
           protein - Tropheryma whipplei (strain Twist) (Whipple's
           bacillus)
          Length = 402

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 267 WKVDQESQAEWGLLLWQERIDTTC-SWNFW 353
           W  +Q +Q EWGL     R  T C +W FW
Sbjct: 367 WMTNQNTQIEWGLSYITSRYKTPCKAWEFW 396


>UniRef50_Q6KGV2 Cluster: Putative RIIA; n=1; Enterobacteria phage
           Felix 01|Rep: Putative RIIA - Enterobacteria phage Felix
           01
          Length = 763

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 85  SNPLSYPNGILTNNSTHDHPLSEFYIFYENSSLTYTQFPVAPDCSSILD 231
           +NP + PNG+    +  DH +S+   F+E +   Y+ F V P+ + + D
Sbjct: 134 TNPTNEPNGLAVRVAVADHRISK---FFEEAGNVYSYFAVKPESNIVYD 179


>UniRef50_Q9SMQ5 Cluster: Proliferating-cell nucleolar antigen-like
           protein; n=2; Arabidopsis thaliana|Rep:
           Proliferating-cell nucleolar antigen-like protein -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 682

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
 Frame = -3

Query: 591 VFI-DPSGFLMIRTFFTYLI*KLPGYSFL-TSNNNISSCKGHDQSLELHHCSKP--NIYS 424
           VF+ D +G   I+TF+       P Y  L T N++ISS   H     +++ SK   N+  
Sbjct: 466 VFLRDQTGINGIKTFYGIKDESFPLYGHLVTRNSDISS---HGNVKRIYYVSKAVKNVLE 522

Query: 423 GYYLMGYPLEVLRI*IQWILCNCPRSSRSKWCQFSLAIKGVPTQL 289
             + +G PL++  + ++       +   +  C F +  +G+P  L
Sbjct: 523 LNFAVGKPLKISSVGLKMFEKQSAKECEANCCSFRITSEGLPVIL 567


>UniRef50_UPI00003829AC Cluster: hypothetical protein Magn03001833;
           n=1; Magnetospirillum magnetotacticum MS-1|Rep:
           hypothetical protein Magn03001833 - Magnetospirillum
           magnetotacticum MS-1
          Length = 181

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 273 VDQESQAEWGLLLWQERIDTTCSWNFWGNYKGSI 374
           VD+   A+W   +WQ+      +  FWG+YKG +
Sbjct: 8   VDRSDAADWDEAVWQQPNANIYASRFWGSYKGRL 41


>UniRef50_Q8PVP4 Cluster: Putative uncharacterized protein; n=1;
           Methanosarcina mazei|Rep: Putative uncharacterized
           protein - Methanosarcina mazei (Methanosarcina frisia)
          Length = 899

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 372 IVSKSSVPLKDIPSNNTRNRYWALSNDEVQEIDHVPYN 485
           I+ KS + L D P    RNRYW + +D ++ ID +  N
Sbjct: 740 IIDKSMLLLVD-PEKEVRNRYWEIYSDRIEIIDKLETN 776


>UniRef50_Q6BLS6 Cluster: Similar to ca|CA3078|IPF19970 Candida
           albicans IPF19970 unknown function; n=2;
           Saccharomycetaceae|Rep: Similar to ca|CA3078|IPF19970
           Candida albicans IPF19970 unknown function -
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 414

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 139 HPLSEFYIFYENSSLTYTQFPVAPDCSSILDTRDEQYPTLLHCGR-LTKNLKLSGDSF 309
           H  ++F    EN    Y  FP    CS+ +D+  +   +++H G+   +NL+L+ + F
Sbjct: 229 HLCNQFIYSSENEVKNYDIFPYVHSCSNFIDSSSQFRSSVVHSGQSKPENLELNHEDF 286


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,690,639
Number of Sequences: 1657284
Number of extensions: 14224476
Number of successful extensions: 32919
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32911
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)