Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060185.seq
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   6.9  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   6.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 253 TLLHCGRLTKNLKLSGDSFYGKRELTPLAPGTSGAITKDPL 375
           +LL   ++ KNL  +    + + EL  LAPG  G +    L
Sbjct: 388 SLLQVAQIFKNLLENHYEEFVRYELGELAPGLVGPLLTSAL 428


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 97  SYPNGILTNNSTHDHPLSEFYIFYEN 174
           +YPN         +HP SE YI ++N
Sbjct: 351 NYPNPQQQYYYNKNHPNSENYINHQN 376


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 363 CNCPRSSRSKWCQFS 319
           C CP     K C+FS
Sbjct: 362 CTCPEGFYGKNCEFS 376


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 97  SYPNGILTNNSTHDHPLSEFYIFYEN 174
           +YPN         +HP SE YI ++N
Sbjct: 299 NYPNPQQQYYYNKNHPNSENYINHQN 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,222
Number of Sequences: 336
Number of extensions: 3651
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)