Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060185.seq
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0248 + 21848346-21848907,21849026-21849583,21849889-218499...    29   4.4  
06_03_0037 + 15773444-15773647,15773862-15774367,15775011-157752...    29   4.4  
09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963...    28   7.7  
03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379     28   7.7  

>09_06_0248 +
           21848346-21848907,21849026-21849583,21849889-21849980,
           21850122-21850167,21850236-21850423
          Length = 481

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +1

Query: 145 LSEFYIFYENSSLTYTQFPVAPDCSSILDTRDEQYPTLLHCGRLTKNLKLSGDSF--YGK 318
           +++F   Y  S+++      A  C+ ILD+R   Y   L   R  KN+ ++   F  Y  
Sbjct: 353 INDFDYSYTQSTISQYFTTAAVKCNCILDSRLPSYENFLVSARYIKNIHINKVFFLSYSH 412

Query: 319 RELTPLAPGTSGAITKDPLYLNPQY 393
           R       G  G + K PL  + QY
Sbjct: 413 RAWDE-GLGVKGNL-KRPLKFHMQY 435


>06_03_0037 +
           15773444-15773647,15773862-15774367,15775011-15775246,
           15775483-15775685,15775989-15776279,15776997-15777084,
           15777539-15777861
          Length = 616

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 375 QWILCNCPRSSRSKWCQFSLAIKGV 301
           QWI+ +  RS +  WCQ     KG+
Sbjct: 363 QWIISHSKRSEKHDWCQRQFKDKGI 387


>09_02_0470 +
           9629062-9629355,9629948-9630893,9630948-9631102,
           9631299-9631358,9633374-9633444,9633626-9633663,
           9633824-9633876,9633970-9635235,9635632-9635672,
           9636821-9636887
          Length = 996

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 507 TSNNNISSCKGHDQSLELHHCSKPNIYSGYYLMG 406
           T ++ + S   H  S  L HC++P I+ GY ++G
Sbjct: 129 TEDSVVLSLMQHSPS-NLKHCNEPVIFDGYKILG 161


>03_02_0867 - 11928040-11928345,11928455-11928961,11929071-11929379
          Length = 373

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 199 PVAPDCSSILDTRDEQYPTLLHCGRLTKNLKLSGDSFYGKRELTPLAPGTS 351
           P  PD  S+L T          C R+  N++L+ D+F+G ++   +  GT+
Sbjct: 111 PEYPD-ESVLWTESGDVGKSFRCIRMLNNIRLNFDAFHGDKDHGGVHDGTT 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,614,341
Number of Sequences: 37544
Number of extensions: 370102
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)