Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060185.seq
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_40314| Best HMM Match : Patched (HMM E-Value=1.3e-08)               28   6.0  
SB_59278| Best HMM Match : Helicase_C (HMM E-Value=0.00034)            28   7.9  

>SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +1

Query: 100 YPNGILTNNSTHDHPLSEFYIFYENSSLTYTQFPVAPDCS-SILDTRDEQYPTLLHCGRL 276
           Y N  +T NS + +P       Y N  +T       P  + + L +  +  PT L+    
Sbjct: 470 YSNPQVTRNSLYSNPQVTRNSLYSNPQVTRNSLFSNPQVTRNSLYSNPQITPTSLY---- 525

Query: 277 TKNLKLSGDSFYGKRELTPLAPGTSGAITKDPLYLNPQ 390
             N +++  S Y   ++TP +  ++  +T++ LY NPQ
Sbjct: 526 -SNPQVTRISLYPNPQVTPTSLYSNPQVTRNFLYSNPQ 562



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +1

Query: 100 YPNGILTNNSTHDHPLSEFYIFYENSSLTYTQFPVAPDCS-SILDTRDEQYPTLLHCGRL 276
           Y N  +T NS + +P       Y N  +T T     P  + + L +  +   T L+    
Sbjct: 349 YSNPQVTQNSLYSNPQVTRNFLYSNPQVTRTSLYSNPQVTRNFLYSNPQVTRTSLY---- 404

Query: 277 TKNLKLSGDSFYGKRELTPLAPGTSGAITKDPLYLNPQ 390
             N +++ +S Y   ++T  +  ++  +T+  LY NPQ
Sbjct: 405 -SNPQVTRNSLYSNPQVTRNSLYSNPQVTRTSLYSNPQ 441



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
 Frame = +1

Query: 100 YPNGILTNNSTHDHPLSEFYIFYENSSLTYTQFPVAPDCS--SILD----TRDEQYPT-L 258
           Y N  +T  S + +P       Y N  +T T     P  +  S+      TR+  Y    
Sbjct: 437 YSNPQVTRTSLYSNPQVTRNFLYSNPQVTRTSLYSNPQVTRNSLYSNPQVTRNSLYSNPQ 496

Query: 259 LHCGRLTKNLKLSGDSFYGKRELTPLAPGTSGAITKDPLYLNPQ 390
           +    L  N +++ +S Y   ++TP +  ++  +T+  LY NPQ
Sbjct: 497 VTRNSLFSNPQVTRNSLYSNPQITPTSLYSNPQVTRISLYPNPQ 540



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
 Frame = +1

Query: 100 YPNGILTNNSTHDHPLSEFYIFYENSSLTYTQFPVAPDCS-SILDTRDEQYPTLLHC--- 267
           Y N  +T NS + +P       Y N  +T T     P  + + L +  +   T L+    
Sbjct: 415 YSNPQVTRNSLYSNPQVTRTSLYSNPQVTRTSLYSNPQVTRNFLYSNPQVTRTSLYSNPQ 474

Query: 268 ---GRLTKNLKLSGDSFYGKRELTPLAPGTSGAITKDPLYLNPQ 390
                L  N +++ +S Y   ++T  +  ++  +T++ LY NPQ
Sbjct: 475 VTRNSLYSNPQVTRNSLYSNPQVTRNSLFSNPQVTRNSLYSNPQ 518



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
 Frame = +1

Query: 100 YPNGILTNNSTHDHPLSEFYIFYENSSLTYTQFPVAPDCSSILDTRDEQYPT-LLHCGRL 276
           Y N  +T NS + +P       Y N  +T T     P       TR   Y    +    L
Sbjct: 305 YSNPQVTRNSLYSNPQVTRNSLYSNPQVTRTSLYSNPQV-----TRTSLYSNPQVTQNSL 359

Query: 277 TKNLKLSGDSFYGKRELTPLAPGTSGAITKDPLYLNPQ 390
             N +++ +  Y   ++T  +  ++  +T++ LY NPQ
Sbjct: 360 YSNPQVTRNFLYSNPQVTRTSLYSNPQVTRNFLYSNPQ 397


>SB_40314| Best HMM Match : Patched (HMM E-Value=1.3e-08)
          Length = 667

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 133 HDHPLSEFYIFYENSSLT-YTQFPV 204
           H +P+S F+IFYE   L+ +  FP+
Sbjct: 513 HSYPISRFFIFYEQHFLSNHVAFPM 537


>SB_59278| Best HMM Match : Helicase_C (HMM E-Value=0.00034)
          Length = 144

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 297 WGLLLWQER-IDTTCSWNFWGNYKGSIVSKSSVPLKDIPSNNT 422
           W L  W++  +  +C  + W N    ++ +  VPL+ + SN T
Sbjct: 29  WYLWSWKDNMLCYSCITSKWSNNLAFLLKEKGVPLRKLKSNTT 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,412,572
Number of Sequences: 59808
Number of extensions: 427991
Number of successful extensions: 998
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)