Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060185.seq
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U23521-6|AAC46812.1|  469|Caenorhabditis elegans Hypothetical
           protein F41C3.5 protein.
          Length = 469

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 378 SKSSVPLK-DIPSNNTRNRYWALSNDEVQEIDHVPYNL 488
           S+S  PLK D+P  N       ++N +V++  H+P+NL
Sbjct: 314 SQSQKPLKADVPCLNDTEMLSYMNNPKVRKAIHIPFNL 351


>Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical
           protein R166.2 protein.
          Length = 618

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 106 NGILTNNSTHDHPLSEFYIFYENSSLTYTQFPVAPD 213
           NG    N   +H + + Y++ ++S L + QF  AP+
Sbjct: 63  NGNKAMNMFPNHQIFDLYVYMDDSDLPFRQFDSAPE 98


>Z47069-3|CAE17781.1|  141|Caenorhabditis elegans Hypothetical
           protein F36G3.3 protein.
          Length = 141

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +1

Query: 85  SNPLSYPNGILTNNSTHDHPLSEFYIFYENSSLTYTQFPVAPDCSSILDTRDEQYPTLLH 264
           + P+ +P+  +T    H H    F    + +S  YT     P  +S +  R E + T L 
Sbjct: 17  TQPVYHPSSHVTAPPYHYHDNGGFENVVDVNSPVYTTLASGPMPTSTIIIRLEPHATKLQ 76

Query: 265 CGRLTKNLKLSGDSFYG 315
           C     ++     S YG
Sbjct: 77  CPYCRMDIVTRTKSVYG 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,869
Number of Sequences: 27780
Number of extensions: 333910
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)