Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060185.seq
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.0  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.0  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +3

Query: 369 SIVSKSSVPLKDIPSNNTRNRYWALSNDEVQEIDHVPYNLRYYCYW*EMNILGAFI*DM* 548
           S+  K +VP     +N  RN Y    +D  Q + +   NL +        ILGA + D+ 
Sbjct: 354 SMKIKQNVPQSGRVNNTQRNEYLLALSDRNQNVLNNDLNLEHV----NFQILGANVNDLI 409

Query: 549 R 551
           R
Sbjct: 410 R 410


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 447 NDEVQEIDHVPYNLRYYCY 503
           NDEV   D+ P +  YY Y
Sbjct: 322 NDEVATYDNTPRDFPYYMY 340


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 357 NYKGSIVSKSSVPLKDIPSNNTRNRYWALSNDEVQEIDHVPYNLRYY 497
           NYK S  +  +    +  +NN  N Y  L  + +  I+ +P  +  Y
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVY 134


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 357 NYKGSIVSKSSVPLKDIPSNNTRNRYWALSNDEVQEIDHVPYNLRYY 497
           NYK S  +  +    +  +NN  N Y  L  + +  I+ +P  +  Y
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVY 134


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 447 CSKPNIYSGY 418
           C  P+IYSGY
Sbjct: 228 CDYPDIYSGY 237


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 447 CSKPNIYSGY 418
           C  P+IYSGY
Sbjct: 228 CDYPDIYSGY 237


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 447 CSKPNIYSGY 418
           C  P+IYSGY
Sbjct: 228 CDYPDIYSGY 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,456
Number of Sequences: 438
Number of extensions: 4725
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)