Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060185.seq
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P...    33   0.13 
At4g18090.1 68417.m02691 hypothetical protein                          31   0.92 
At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containi...    29   2.8  

>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 783

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
 Frame = -3

Query: 591 VFI-DPSGFLMIRTFFTYLI*KLPGYSFL-TSNNNISSCKGHDQSLELHHCSKP--NIYS 424
           VF+ D +G   I+TF+       P Y  L T N++ISS   H     +++ SK   N+  
Sbjct: 567 VFLRDQTGINGIKTFYGIKDESFPLYGHLVTRNSDISS---HGNVKRIYYVSKAVKNVLE 623

Query: 423 GYYLMGYPLEVLRI*IQWILCNCPRSSRSKWCQFSLAIKGVPTQL 289
             + +G PL++  + ++       +   +  C F +  +G+P  L
Sbjct: 624 LNFAVGKPLKISSVGLKMFEKQSAKECEANCCSFRITSEGLPVIL 668


>At4g18090.1 68417.m02691 hypothetical protein 
          Length = 278

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +1

Query: 169 ENSSLTYTQFPVAPDCSSILDTRDEQYPTLLHCGRLTKNLKLSGDSFYGKRELTPL 336
           EN ++   Q  ++ + S+ILD  DE+ PT+L      KN KL      G  + TP+
Sbjct: 38  ENPTILLKQRNLSAELSTILDGSDEENPTILE----KKNKKLKKTRRRGSMKKTPI 89


>At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 654

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 497 LLLVRNEYPGSFYMRYVKKVRIIRNPDGSIKTPXGSWV 610
           L+L+ N Y  +       ++R+I+   G +KTP  SWV
Sbjct: 615 LVLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSWV 652


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,539,850
Number of Sequences: 28952
Number of extensions: 312632
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)