Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060184.seq
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   4.0  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.3  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription
          factor homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = -2

Query: 83 HYYDQIFNKKQ 51
          H+YD++FN++Q
Sbjct: 2  HFYDKMFNQEQ 12


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 283 SIAPPSSELDHFRTPNLP 230
           S   PSSE D+F    LP
Sbjct: 155 SYIKPSSERDYFSVKKLP 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,236
Number of Sequences: 336
Number of extensions: 2057
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)