Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060184.seq
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    34   0.022
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    33   0.029
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   3.3  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    27   3.3  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 16/43 (37%), Positives = 28/43 (65%)
 Frame = +3

Query: 315 QXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSIQ 443
           Q  I  +Q QNR LK+E +  + ++KAL   N+SL++A  +++
Sbjct: 314 QNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVK 356


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 282 LPPSTVSRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSIQAKA 452
           L  S    ++ +  I  L+ +N  LK  L+    R  AL  EN+SLR+A+  +Q ++
Sbjct: 79  LQSSNNQAEESRNLISVLRNENESLKTNLENQNKRFDALTTENQSLRRANSELQEQS 135



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 294 TVSRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSL-RQASVSIQAKAXQEGR 467
           T     L+     LQ+Q+++   +L   K +++ALQ EN  L  Q   + QA +  E R
Sbjct: 118 TTENQSLRRANSELQEQSKIASEQLSIAKDQIEALQNENSHLGEQVQSAHQALSDIEER 176


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 375 KYLTPLSKLYFVAVEIQFXSVVDHEKQYSEEALRHRQVNWITF 247
           K LT   K  F A E +  SVV+ E +Y  E ++ ++ +W  F
Sbjct: 178 KSLTSSCKFLFEAKE-RLTSVVETEHEYYTELVKVKEASWPLF 219


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 271 PSSELDHFRTPNLPFYDLVKLXNHPFARVTXTA--TKCQNSDL-TINENYI 128
           P SEL+H  +    ++ +      P+ RVT  A  TKC +S L ++  +YI
Sbjct: 388 PDSELEHLSSLLHGYHFMASSTELPWLRVTCNAIVTKCLDSQLPSVRLSYI 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,051
Number of Sequences: 5004
Number of extensions: 34995
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)