Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060184.seq
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963...    30   1.5  
08_01_0216 - 1717696-1718265,1718856-1720082,1720558-1720627,172...    29   2.6  
03_05_0457 - 24506420-24506974,24507142-24508329,24509262-245093...    29   4.5  
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365...    29   4.5  

>09_02_0470 +
           9629062-9629355,9629948-9630893,9630948-9631102,
           9631299-9631358,9633374-9633444,9633626-9633663,
           9633824-9633876,9633970-9635235,9635632-9635672,
           9636821-9636887
          Length = 996

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 267 DGGAMLPPSTVSRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSIQ 443
           D G +  PS++  D  Q R    + Q+ +L VE   +K+ ++A Q   R + Q S  IQ
Sbjct: 18  DAGRLKLPSSIDEDMAQVRRTLARLQDVLLSVEGKYFKMSMEA-QEWMRKINQISYDIQ 75


>08_01_0216 -
           1717696-1718265,1718856-1720082,1720558-1720627,
           1721579-1721602,1722073-1722140
          Length = 652

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 255 SSSLDGGAMLPPSTVSRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLR 422
           S +L+GG+     T+S +Q +       ++N+ L+  +D  K RV  L+ E  ++R
Sbjct: 526 SENLEGGSRQLIPTISGEQYRPGWPLASRENQALREGMDNMKQRVADLEKECSTMR 581


>03_05_0457 -
           24506420-24506974,24507142-24508329,24509262-24509331,
           24510627-24510704,24511088-24511149
          Length = 650

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = +3

Query: 255 SSSLDGGAMLPPSTVSRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQ 425
           S +L+G   L  S  +  +      ++++ N+VLKV +D  ++R+  L+ E  ++RQ
Sbjct: 529 SDNLEGSRPLRSSITTSGEAGGWATAVRE-NQVLKVGMDNMRMRLSELEKECSTMRQ 584


>03_05_0432 - 24231984-24233048,24233391-24235160,24235261-24236582,
            24236668-24237013
          Length = 1500

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/55 (25%), Positives = 33/55 (60%)
 Frame = +3

Query: 306  DQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSIQAKAXQEGRI 470
            D+L+ ++ +++ +NR LKV+L+     + +LQ E  +L + ++S+     Q  ++
Sbjct: 1089 DELKDKLNAVEIENRRLKVDLNGDFTVLGSLQNEVSALEKQTLSLANDCLQSNKL 1143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,783,448
Number of Sequences: 37544
Number of extensions: 209188
Number of successful extensions: 471
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)