Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060184.seq
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27)             71   1e-12
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)           29   2.6  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              29   2.6  
SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)                     29   4.6  
SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)                 29   4.6  
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)                  29   4.6  
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)               28   6.0  
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)                 28   6.0  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        28   6.0  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_33645| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_771| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.27)
          Length = 506

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 40/76 (52%), Positives = 52/76 (68%)
 Frame = +3

Query: 324 IESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSIQAKAXQEGRIYIXYIAEKNTG 503
           I  L+Q+NRVLK+ELDT +LR K+LQ ENR+LRQASVSIQAKA QE       + +K   
Sbjct: 36  IHLLKQENRVLKMELDTCRLRCKSLQEENRALRQASVSIQAKAEQEEEFISNTLLKKIQS 95

Query: 504 L*XXXRDI*AXHYERE 551
           L    ++  A +YE+E
Sbjct: 96  L-KKEKETLAMNYEQE 110


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 327  ESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSI 440
            E L ++N +LKVEL+  K  + AL+ E  +++ A V +
Sbjct: 1545 EKLVKENEILKVELEQLKKEMMALKVEMENMQMAPVQV 1582


>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1444

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 294 TVSRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQA 428
           T   D+L+   E++Q++   L VEL  +K RV  L+ E  + +++
Sbjct: 822 TSEEDELKSHQEAIQKEKNNLAVELADFKARVTQLERELEAYKKS 866


>SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)
          Length = 1084

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 24/34 (70%)
 Frame = +3

Query: 327 ESLQQQNRVLKVELDTYKLRVKALQXENRSLRQA 428
           ++LQQ+ R +++ELDT K +V + Q    SL++A
Sbjct: 355 DTLQQRVREMEIELDTQKKQVSSSQDAWASLKKA 388


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/70 (21%), Positives = 40/70 (57%)
 Frame = +3

Query: 297  VSRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSIQAKAXQEGRIYI 476
            + RD+L+ ++++L++  R ++ + +T   +++ ++  NRS+ +  + I+ K+    R   
Sbjct: 1492 LKRDELERQMDALKKDMRRVEADYETAIQKIENMEKANRSVNEKILIIE-KSNDRDRENA 1550

Query: 477  XYIAEKNTGL 506
              + E+N  L
Sbjct: 1551 KRMEEENINL 1560


>SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)
          Length = 676

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/47 (31%), Positives = 30/47 (63%)
 Frame = +3

Query: 312 LQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSIQAKA 452
           L+ +++  QQ    L+ ELD+ + RVK+L+    S+++A++  +A A
Sbjct: 252 LKGQMQQQQQTVSQLQDELDSSQARVKSLEYGMMSMQEAAIREKAAA 298


>SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)
          Length = 266

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 282 LPPSTVSRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASV 434
           L  S  +R+ LQ ++ SLQQ+   L+ ELD  +      + E   L Q S+
Sbjct: 176 LAQSEQARNDLQAQVHSLQQKLNSLEDELDRSQKERALYESEANDLNQTSM 226


>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 202 HPFARVTXTATKCQNSDLTINENYIFLREITIVFFLVISITITIKSLTRNS 50
           H FA +T T T+ +   L++NE    L     V    +   I  +S+TR S
Sbjct: 780 HEFANLTATQTQGEKQTLSLNETIQILPSPITVGTTAVESVIVSESITRPS 830


>SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 601

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 306 DQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLR 422
           D+LQ R+  L Q+    +    T + ++ +++ EN SLR
Sbjct: 94  DELQERLNDLTQERENYETREKTLQSKITSIEKENNSLR 132


>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
          Length = 834

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 131 YFFTRNYYCIFFSNINHYYDQIFN 60
           Y + R  + I F  +NH YD IF+
Sbjct: 274 YMYLRQLFRILFRTLNHQYDYIFD 297


>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
          Length = 589

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +3

Query: 291 STVSRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSIQAKAXQEGRI 470
           S +S    +  +E L  +N  LK++    + + KAL+ E ++L++   + + K  +E + 
Sbjct: 150 SEMSVPNSEDGLEELHNENEFLKIQASRLEDQKKALEQEVQTLKKIIANDRDKKEEESKD 209

Query: 471 YIXYIAE 491
           +  +  E
Sbjct: 210 FSRHFRE 216


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +3

Query: 291  STVSRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSIQAKAXQEGRI 470
            S +S    +  +E L  +N  LK++    + + KAL+ E ++L++   + + K  +E + 
Sbjct: 2678 SEMSVPNSEDGLEELHNENEFLKIQASRLEDQKKALEQEVQTLKKIIANDRDKKEEESKD 2737

Query: 471  YIXYIAE 491
            +  +  E
Sbjct: 2738 FSRHFRE 2744


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 327 ESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSIQ 443
           ESL++ N VL++EL+    + K+L+  N +L +    +Q
Sbjct: 337 ESLKKANNVLQIELEELIKKEKSLKEANENLWRDKAKLQ 375


>SB_33645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 184 TXTATKCQNSDLTINENYIFLREITIVFFLVISITITIKSLTRNSV 47
           T T T    +  TIN   I +  I I+F +V+ I + I S+  +S+
Sbjct: 33  TTTTTITTTTTTTINIIIIIIIIIIIIFIIVLIIVVVIPSIINSSM 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,324,996
Number of Sequences: 59808
Number of extensions: 251640
Number of successful extensions: 903
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)