Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060184.seq
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    28   5.3  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    28   5.3  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    28   5.3  
Z47070-3|CAA87341.1|  528|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    28   7.0  
Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical p...    27   9.3  
Z69635-4|CAB54216.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z69635-3|CAA93460.1|  342|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z54238-9|CAL90890.1|   84|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/23 (39%), Positives = 19/23 (82%)
 Frame = -3

Query: 139 ENYIFLREITIVFFLVISITITI 71
           + Y+F++ I ++FF +I++TI+I
Sbjct: 230 QKYMFIQSIMVLFFKIITVTISI 252


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 306 DQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQ 425
           D+L  R+E+L ++N  LK E++  K + + L+ E  S ++
Sbjct: 665 DELNRRVENLLRENNRLKSEVNPLKDKYRDLENEYNSTQR 704


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 306 DQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQ 425
           D+L  R+E+L ++N  LK E++  K + + L+ E  S ++
Sbjct: 738 DELNRRVENLLRENNRLKSEVNPLKDKYRDLENEYNSTQR 777


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
           interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 306 DQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQ 425
           D+L  R+E+L ++N  LK E++  K + + L+ E  S ++
Sbjct: 738 DELNRRVENLLRENNRLKSEVNPLKDKYRDLENEYNSTQR 777


>Z47070-3|CAA87341.1|  528|Caenorhabditis elegans Hypothetical
           protein T09B9.4 protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +1

Query: 463 EEYISNTLLKKIQ 501
           EEYISN+LLKKIQ
Sbjct: 188 EEYISNSLLKKIQ 200


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = +3

Query: 273  GAMLPPSTVSRDQLQXRIESLQQQN-------RVLKVELDTYKLRVKALQXENRSLRQAS 431
            G    PST    + + RI  L+++        +++K ELD YK ++ A++ E  SL+ A+
Sbjct: 1226 GLQRSPSTSQVMEKERRILELEKEKAAINTDLQLVKRELDVYKSQLSAVESEKESLQTAN 1285


>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -3

Query: 151 LTINENYIF-LREITIVFFLVISIT 80
           +T+N NYIF  R    +FF++I++T
Sbjct: 112 ITLNRNYIFTFRRTLFLFFVIIALT 136


>Z99942-4|CAB17069.1|  541|Caenorhabditis elegans Hypothetical
           protein H13N06.4a protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = -3

Query: 274 PPSSELDHFRTPN--------LPFYDLVKLXNHPFARVTXTATKCQNSDLTINE 137
           PPS   DHF TPN        LP  D +K  NH   R+T    K +  DL++ E
Sbjct: 192 PPSLLTDHFYTPNELFFVRNHLPVPD-IKTENH---RLTVETIKGKTVDLSVEE 241


>Z92782-12|CAH60765.1|  328|Caenorhabditis elegans Hypothetical
           protein F14F8.13 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 139 ENYIFLREITIVFFLVISITITIKSLTRNSVKKL 38
           +NYIF++   ++FF +I + I I S T + + ++
Sbjct: 231 QNYIFIQSFLVLFFKLIPVPIFIWSKTTSILTEM 264


>Z69635-4|CAB54216.1|  336|Caenorhabditis elegans Hypothetical
           protein F19B6.2b protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -3

Query: 289 GGSIAPPSSELDHFRTPNLPFYDLVKLXNHPFARVT 182
           GG I  PSS L+     N+P   L KL N    RVT
Sbjct: 41  GGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVT 76


>Z69635-3|CAA93460.1|  342|Caenorhabditis elegans Hypothetical
           protein F19B6.2a protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -3

Query: 289 GGSIAPPSSELDHFRTPNLPFYDLVKLXNHPFARVT 182
           GG I  PSS L+     N+P   L KL N    RVT
Sbjct: 47  GGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVT 82


>Z54238-9|CAL90890.1|   84|Caenorhabditis elegans Hypothetical
           protein T28C6.10 protein.
          Length = 84

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 303 RDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXE 407
           R Q   R + LQ+Q   +K ELD YKL    L+ E
Sbjct: 2   RPQRNSREDQLQEQLNKIKRELDNYKLENFLLKEE 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,342,671
Number of Sequences: 27780
Number of extensions: 203781
Number of successful extensions: 610
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)