Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060184.seq
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.2  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.2  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   6.2  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   6.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   6.2  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   6.2  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   6.2  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   6.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.2  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   6.2  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   6.2  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   6.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.2  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -3

Query: 235 LPF--YDLVKLXNHPFARVTXTATKCQNSDLTINENYIFLREITIVFFLVISITITI 71
           +PF  Y  V L  +P      +A     + LTI  ++      TI+FFL+  + I +
Sbjct: 174 IPFAIYTKVNLVEYPPESGNYSADSAMCAMLTIYADFPLYELSTIIFFLIPMLIILV 230


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SEIDLRSRTKEERLQHRREAWL 44


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 318 SVVDHEKQYSEEALRHRQVNWI 253
           S +D   +  EE L+HR+  W+
Sbjct: 23  SKIDLRSRTKEERLQHRREVWL 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,453
Number of Sequences: 438
Number of extensions: 2883
Number of successful extensions: 26
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)