Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060184.seq
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical...    32   0.30 
At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical...    32   0.30 
At5g16020.1 68418.m01873 stress protein-related contains weak si...    29   3.7  
At1g30440.1 68414.m03719 phototropic-responsive NPH3 family prot...    29   3.7  
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot...    28   6.5  
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD...    28   6.5  
At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical...    27   8.6  
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    27   8.6  

>At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical to
           G-box binding factor 1 SP:P42774 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00170 bZIP
           transcription factor
          Length = 313

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 306 DQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLR 422
           +QLQ R+ESL  +N+ L+ EL         L+ EN S++
Sbjct: 246 EQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQ 284


>At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical to
           G-box binding factor 1 SP:P42774 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00170 bZIP
           transcription factor
          Length = 315

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 306 DQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLR 422
           +QLQ R+ESL  +N+ L+ EL         L+ EN S++
Sbjct: 248 EQLQQRVESLSNENQSLRDELQRLSSECDKLKSENNSIQ 286


>At5g16020.1 68418.m01873 stress protein-related contains weak
           similarity to Swiss-Prot:P18899 stress protein (DNA
           damage-responsive protein 48) (DDRP 48) (YP 75)
           (Flocculent specific protein) [Saccharomyces cerevisiae]
          Length = 641

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 167 MSKFRFNYQ*KLYFFTRNYYCIFFSNINHYYDQIFNKK 54
           M  FRF Y    +FF   ++ +FFS ++   DQ   KK
Sbjct: 1   MVAFRFVYIPLPFFFFFFFFFVFFSGVSQLQDQTATKK 38


>At1g30440.1 68414.m03719 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 665

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = +3

Query: 339 QQNRVLKVELDTYKLRVKALQXENRSLRQ 425
           ++N+VLKV +D+ ++RV  L+ E  ++RQ
Sbjct: 554 RENQVLKVGMDSMRMRVCELEKECSNMRQ 582


>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 661

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 339 QQNRVLKVELDTYKLRVKALQXENRSLRQ 425
           +QN+VLKV++   + RV  L+ E +S++Q
Sbjct: 561 RQNQVLKVDMQKMRSRVGELEEEFQSIKQ 589


>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
           CDP-related similar to CCAAT displacement protein (CDP)
           (Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
           contains Pfam:PF00904 Involucrin repeat
          Length = 689

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = +3

Query: 288 PSTVSRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQ 425
           P+  S  +   ++  ++ +NR +KVEL+ ++     L+ +  ++R+
Sbjct: 125 PALASIAEQDRKLSEVESENRKMKVELEEFRTEATHLKNQQATIRR 170


>At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 382

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
 Frame = +3

Query: 276 AMLPPSTVSRDQLQXRIESLQQQNRV------LKVELDTYKL--RVKALQXENRSLRQAS 431
           AM+PP T  +++ + + E  +Q NR       L+ + +T +L  +V+AL  EN +LR   
Sbjct: 246 AMVPPETWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSEL 305

Query: 432 VSIQAKA 452
             +  K+
Sbjct: 306 NQLNEKS 312


>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
            myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
            thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +3

Query: 300  SRDQLQXRIESLQQQNRVLKVELDTYKLRVKALQXENRSLRQASVSIQAKAXQEGR 467
            S +  + ++E  +++ + L+  L   + +   L+ EN+ LRQ +VS+       GR
Sbjct: 1017 SLEDKKKKLEETEKKGQQLQESLTRMEEKCSNLESENKVLRQQAVSMAPNKFLSGR 1072


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471,198
Number of Sequences: 28952
Number of extensions: 179376
Number of successful extensions: 426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)