Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060183.seq
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.0  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.0  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   9.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.2  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 282 CDXEMTWPXTCCRPEPGTL 226
           CD  +  P  CC+  PG L
Sbjct: 94  CDEPVHRPGRCCKTCPGDL 112


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 322 SWYSSREAGARHQQTMRLWFP 384
           SWY+    GA+     ++W P
Sbjct: 27  SWYAGYHQGAQMGPEQQMWEP 47


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 322 SWYSSREAGARHQQTMRLWFP 384
           SWY+    GA+     ++W P
Sbjct: 27  SWYAGYHQGAQMGPEQQMWEP 47


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 545 GPRGCLSKA*LVP 507
           GPR C++K  +VP
Sbjct: 420 GPRNCIAKFDIVP 432


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 289 RNLHATSRGAQSWYSSR 339
           RNL+ T R  + W+ +R
Sbjct: 278 RNLNLTERQVKIWFQNR 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,388
Number of Sequences: 336
Number of extensions: 3056
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)