Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060183.seq
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 57 1e-08
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 56 3e-08
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 50 2e-06
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 49 3e-06
03_02_0167 - 6088818-6089870 33 0.28
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 1.5
01_01_1159 + 9224331-9224473,9224586-9224727,9225412-9225483,922... 29 2.6
12_02_0620 - 21283946-21284164,21284480-21284505,21285295-21285442 29 3.4
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 3.4
01_01_0003 + 11774-12813,12906-13271,13359-13437,13840-13968,139... 29 3.4
10_05_0080 - 8907628-8908182 28 5.9
04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141 28 5.9
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 57.2 bits (132), Expect = 1e-08
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMSXAP---- 472
R AAL AG+P P +N++C SG ++++ +AQ I G + VA G+E+MS AP
Sbjct: 80 RQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMSNAPKYVA 139
Query: 473 FAVRNVRFGTALAPTTPSKDTLW 541
A R RFG + KD LW
Sbjct: 140 AARRGSRFGHDVLIDGMLKDGLW 162
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 105 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
+ + IVG RTP G G + AT+L ++A AL+ A V PA V +
Sbjct: 15 RDVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEV 64
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMSXAPFAVR 484
R AAL AGIP +N++C SG ++ + +AQ IL G I VA G+E+MS AP +
Sbjct: 74 RQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGMESMSNAPKYIA 133
Query: 485 NVRFGTALAPTT----PSKDTLW 541
R G+ T KD LW
Sbjct: 134 EARKGSRFGHDTLVDGMLKDGLW 156
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +3
Query: 105 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
+ + +VG RTP G F G + SAT+L +IA ALK A V PA V +
Sbjct: 9 RDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEV 58
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +2
Query: 254 VXGQVISXSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKI 433
V G V++ I R AA AG P P++ +NR C SG Q++ N A +I G I
Sbjct: 100 VVGTVLAPGSQRAIEC-RMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDI 158
Query: 434 SVAXGVENMS 463
+A G+E+M+
Sbjct: 159 GIAAGLESMT 168
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/84 (34%), Positives = 41/84 (48%)
Frame = +2
Query: 212 LEGGRSVPGSGRQHVXGQVISXSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSI 391
L+ + PG V G V+ I R AA AG+P+ PV +NR C SG Q++
Sbjct: 84 LDNTKINPGEIGDIVVGTVLGPGSQRAIEC-RAAAFYAGVPENVPVRTVNRQCSSGLQAV 142
Query: 392 VNSAQDILTGAAKISVAXGVENMS 463
+ A I G I + G+E+MS
Sbjct: 143 ADVAAAIKAGFYDIGIGAGLESMS 166
>03_02_0167 - 6088818-6089870
Length = 350
Score = 32.7 bits (71), Expect = 0.28
Identities = 27/91 (29%), Positives = 43/91 (47%)
Frame = +1
Query: 262 PSHLXITN*RNLHATSRGAQSWYSSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSS 441
P L ++ R ATS+G + SS + GAR ++T+RL+ + + R QDL
Sbjct: 233 PPRLDMSFGRFTFATSQGVEEEGSSYDVGARGKRTVRLFVAAEGKPMYA-AGRGMQDLLE 291
Query: 442 GGSREHVAXALRGQKREVRHGSGTNYAFERH 534
G +A +R + R GS ++ RH
Sbjct: 292 SGGGLPLAVTVRARSRYRMVGSLVRLSY-RH 321
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 322 SWYSSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSSGGSRE 456
SWYSS AG ++ F I R G ++R++ + GG RE
Sbjct: 1353 SWYSSNSAGTQN-------FTIAGSSRPGEWNRKNNNRGQGGGRE 1390
>01_01_1159 +
9224331-9224473,9224586-9224727,9225412-9225483,
9225853-9225933,9226031-9226144,9226770-9226826,
9227209-9227310,9227617-9227767,9227851-9227927,
9228721-9228828,9229684-9229754,9230546-9230687,
9230903-9231001,9231112-9231240,9231445-9231559,
9231786-9231853,9233410-9233523,9233587-9233703,
9234079-9234132,9234221-9234326,9235272-9235402,
9235489-9235557
Length = 753
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -2
Query: 609 WAPSFLGGSCPWGVRSMSPRVRAQRVSFEGVVGARAVPNLTFLTAKGACDMFSTPXATEI 430
W P F GGS W V VR + + G G+R + +L + A D AT++
Sbjct: 109 WIPYFDGGS--WSVLEALDGVRTRPGMYIGSTGSRGLHHLVYEILDNAVDEAQAGYATKV 166
>12_02_0620 - 21283946-21284164,21284480-21284505,21285295-21285442
Length = 130
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2
Query: 294 IPSVCDXEMTWPXTCCRPEPGTLRPPSRHQPWLS 193
+P D T P R G LRPP+ PW+S
Sbjct: 94 VPESHDNGFTQPPVSGRGTIGFLRPPTSRAPWIS 127
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 302 PRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILT 418
PR LK P+E I+R+C Q I++S Q I +
Sbjct: 249 PRTTKLKYRYPRESDHKNISRICREHLQEIISSQQKIFS 287
>01_01_0003 +
11774-12813,12906-13271,13359-13437,13840-13968,
13969-14171,14266-14359
Length = 636
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 507 WHQLRLRKTPSGPGLSDSYCGLPMG 581
WH ++ RK+P G+ + CG+P G
Sbjct: 89 WHGVQQRKSPWQDGVGGTNCGIPPG 113
>10_05_0080 - 8907628-8908182
Length = 184
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +3
Query: 138 PFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSXAKSSLXHKLTESTRHVTRR 317
P G F G FR + + + + + + SP+ + S S + S RH RR
Sbjct: 43 PTGCFAGCFRPSPTSSRSSPPSCNSQADRPASPSLIRSPSAWIRARGQSFASSARHARRR 102
Query: 318 S 320
S
Sbjct: 103 S 103
>04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141
Length = 606
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +1
Query: 418 RRSQDLSSGGSREHVAXALRGQKREVRHGSGTNYAFERHPLGPDSRTHTADSPWA*PAEK 597
RR+ L G +H AL +K V+HG + HP H PW A+
Sbjct: 433 RRNPKLRIGLYSQHFCDALPEEKSPVQHGQCHRECLDTHP-------HLKSKPWEARAKL 485
Query: 598 AR 603
AR
Sbjct: 486 AR 487
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,188,456
Number of Sequences: 37544
Number of extensions: 420174
Number of successful extensions: 1263
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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