Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060183.seq
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1)                 38   0.006
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            31   0.64 
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)                    29   3.4  
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)                       28   7.9  

>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
 Frame = +2

Query: 254 VXGQVISXSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKI 433
           + GQV++  Q  G    R AA+ AGIP   P  G+N LCGSG +++    Q +  G + I
Sbjct: 58  ILGQVLTAGQGQG--PARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNI 115

Query: 434 SVAXGVENMSXAPFAVR---NVRFGTALAPTTPSKDTL 538
            VA G E+MS AP        ++FG      T  KD L
Sbjct: 116 VVAGGQESMSQAPHCCHMRPALKFGDMTLIDTMLKDGL 153



 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 105 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
           + + I  A RTP G+  G   +  A EL +I    AL  A +SP  V  +
Sbjct: 8   RDVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEV 57


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 38/65 (58%)
 Frame = +2

Query: 212 LEGGRSVPGSGRQHVXGQVISXSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSI 391
           +E G+  P +    + G V+  +  D  Y  RH  +K+ +P   P L +NRLCGSGFQSI
Sbjct: 738 MESGKVDPATVDSVIFGNVLQCAN-DAAYVARHIGIKSKVPVTTPALTVNRLCGSGFQSI 796

Query: 392 VNSAQ 406
           ++ AQ
Sbjct: 797 ISGAQ 801



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/43 (48%), Positives = 28/43 (65%)
 Frame = +3

Query: 126 AKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
           AKRT FG FGG  ++ +AT L   A+V A++   V PA VDS+
Sbjct: 709 AKRTAFGAFGGRLKDFTATVLGEHASVAAMESGKVDPATVDSV 751


>SB_41352| Best HMM Match : MIB_HERC2 (HMM E-Value=3.1)
          Length = 271

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 310 RGAQSWYSSREAGARHQQTMRLWFPIDREQRSGHFD-RRSQDLSSGGSREHVAXALRGQK 486
           RGAQ+W S +E     ++     +  +   RSG+F+ R S D SSG  R H A   R + 
Sbjct: 28  RGAQNWSSPQERSWTSEE-----YGGEESYRSGNFEARESSDASSGSKRRHRASPHRHKY 82

Query: 487 REVRHGSGTNY 519
            E RH   T Y
Sbjct: 83  HE-RHSEETGY 92


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 329 IPQEKPVLGINRLCGSGFQSIVNSAQDILTGA 424
           +P   P   IN++C SG +SI+ +AQ ++ G+
Sbjct: 26  LPISTPCTTINKVCASGMKSIMAAAQSLMCGS 57


>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
          Length = 600

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 316 AQSWYSSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSSGGSREHVAXALRGQKREV 495
           ++S Y S E  ++H   +R    +     S   DRR  D+  GG     +  +  ++ +V
Sbjct: 401 SESVYESIEDNSQHNNRLRSVPRLGNTFESARRDRR--DVGEGGCHIAESSTMHAEESDV 458

Query: 496 RHGSGTNYAFERHPLG 543
           + G G       H LG
Sbjct: 459 KVGQGNELPVVEHFLG 474


>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = +3

Query: 246 DSMSXAKSSLXHKLTESTRHVTRRSKLVFLKRSRCSASTDYAALVSNRS*TALRTF*PAQ 425
           D+ + A+ S+ HK     R  T  S  +   +++   S  +     NRS T+       Q
Sbjct: 277 DAQAQAQESVKHKRKRKNRSNTSASARIGQTQAQAQESVKHKRKRKNRSNTSASAR-IGQ 335

Query: 426 PRSQ*RXE*RTCRXRPSRSET*GSARL 506
            ++Q +   +  R R +RS T  SAR+
Sbjct: 336 TQAQAQESVKHKRKRKNRSNTSASARI 362


>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -1

Query: 202 VAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYT 74
           VA+  S+V+ V + TPPK+P   L   T+  PL  A +++ +T
Sbjct: 66  VALKESNVSPVPKTTPPKIPEEDLRPVTLTSPL--AKVMEGFT 106


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 28/115 (24%), Positives = 45/115 (39%)
 Frame = +1

Query: 289 RNLHATSRGAQSWYSSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSSGGSREHVAX 468
           R+  + SR  +S   SR + +R +         DRE+      RRS+D S    +     
Sbjct: 206 RSRRSRSRTRRSRSRSRRSRSRSRDRRPRRRSRDRERSRERRSRRSRDKSRSREKSRERG 265

Query: 469 ALRGQKREVRHGSGTNYAFERHPLGPDSRTHTADSPWA*PAEKARSPVRNHQETK 633
             RG+  E       + + +R    P+ R    DS      ++ RS  R  +E K
Sbjct: 266 GSRGRSAEKSPEKQRDKSDDRRSRSPE-RKIKEDSVTKSDEDEGRSSERREKEEK 319


>SB_377| Best HMM Match : IQ (HMM E-Value=0.0002)
          Length = 1376

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 427  QDLSSGGSREHVAXALRGQKREVRHGSGTNYAFERHPLGPDSRTHTADSPWA*PAEKA-- 600
            +D   GG++ HV  A R +++ +      N A  R    P   T TA++ +  P   A  
Sbjct: 1237 KDAYEGGNQRHVEGADREEEQGITEAETPNLANSRADRTPQDITPTANAAFFPPEALALT 1296

Query: 601  RSPVRNHQETK 633
             +P++   E K
Sbjct: 1297 STPLKPRTENK 1307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,268,964
Number of Sequences: 59808
Number of extensions: 431036
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)