Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060183.seq
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical p...   116   2e-26
U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa ...    56   2e-08
U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical pr...    47   1e-05
U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical pr...    46   2e-05
M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical pr...    41   7e-04
AC024696-11|AAK84510.1|  401|Caenorhabditis elegans Hypothetical...    29   3.0  

>Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical
           protein F53A2.7 protein.
          Length = 394

 Score =  116 bits (279), Expect = 2e-26
 Identities = 61/140 (43%), Positives = 85/140 (60%)
 Frame = +2

Query: 254 VXGQVISXSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKI 433
           + G V++ S+ DGIY  RH  LK+G+PQ    L +NRLCGSGFQ++VN+AQ I  G + I
Sbjct: 54  IFGNVVASSR-DGIYLSRHIGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQAIKLGESNI 112

Query: 434 SVAXGVENMSXAPFAVRNVRFGTALAPTTPSKDTLWARTLGLILRTPHGHDPPRKLGAQF 613
            +A G ENMS  PFAVR++RFGTAL      +D LW        +   G     KLGAQ+
Sbjct: 113 VLAGGTENMSMVPFAVRDIRFGTALGKKYEFEDMLWDSLSDPYAKLAMG-QTAEKLGAQY 171

Query: 614 GITKRRS*QLPLYNRNQKWK 673
            +T++ + +  L ++   WK
Sbjct: 172 KVTRQEADEFALRSQT-LWK 190



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 27/48 (56%), Positives = 32/48 (66%)
 Frame = +3

Query: 105 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVD 248
           K +FIVGAKRT FGTFGG  +  SAT+L  +A+  ALK A V    VD
Sbjct: 4   KCVFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVD 51


>U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa
           thiolase protein 1 protein.
          Length = 407

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 33/91 (36%), Positives = 49/91 (53%)
 Frame = +2

Query: 212 LEGGRSVPGSGRQHVXGQVISXSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSI 391
           LE G   P S ++   GQV   +   G    R AAL AG+     V  +N++C SG ++I
Sbjct: 58  LERGAVKPSSIQEVFLGQVCQANA--GQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAI 115

Query: 392 VNSAQDILTGAAKISVAXGVENMSXAPFAVR 484
           + +AQ I TG    ++  G+E+MS  PF V+
Sbjct: 116 ILAAQQIQTGHQDFAIGGGMESMSQVPFYVQ 146



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +3

Query: 99  SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
           S K  FIVGA RTP G+F     + +A EL ++A   AL+   V P+ +  +
Sbjct: 20  SNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEV 71


>U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical
           protein T02G5.7 protein.
          Length = 390

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +3

Query: 99  SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
           S K +FI+   RTP G + G F N  A EL T+A   A++ +GV+P +++ +
Sbjct: 2   SDKKVFILSGARTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEV 53



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +2

Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMSXAPFAV- 481
           R  +L AG+P     + +N++C S  +++V +A +I  G     +  G ENMS  PF V 
Sbjct: 69  RQISLSAGLPVTTQAVTVNKVCSSSMKALVTAAVEIKAGYYDTILVVGTENMSQVPFYVP 128

Query: 482 -RNVRFGTALAPTTPSKDTL 538
              + FG        SKD L
Sbjct: 129 RGEIPFGGIQMTDGISKDGL 148


>U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical
           protein T02G5.4 protein.
          Length = 460

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/67 (35%), Positives = 38/67 (56%)
 Frame = +2

Query: 290 GIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMSXA 469
           G  + R AAL AG+     V  +N+   SG ++I+ +AQ I TG   +++  G+E+MS  
Sbjct: 162 GQASARQAALGAGLDLSVAVTTVNKGWSSGMKAIILAAQQIQTGHQDLAIGGGMESMSQV 221

Query: 470 PFAVRNV 490
           PF +  V
Sbjct: 222 PFFLARV 228



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +3

Query: 99  SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMSXAKSSLX 278
           S K  FIVGA RTP G+F     + +A EL ++A   AL+   V P+ +   +     + 
Sbjct: 98  SNKDAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFLGQVC 157

Query: 279 H 281
           H
Sbjct: 158 H 158


>M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical
           protein B0303.3 protein.
          Length = 448

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
 Frame = +2

Query: 254 VXGQVISXSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKI 433
           + G VI   +T  I   R AAL AG+P + P   +   C S   ++      + TG A  
Sbjct: 74  ICGTVIQECKTSNI--AREAALLAGVPDKIPAHTVTLACISSNVAMTTGMGMLATGNANA 131

Query: 434 SVAXGVENMSXAPFAV-RNVR---FGTALAPTTPSK 529
            +A GVE +S  P    RN R    G   A   PSK
Sbjct: 132 IIAGGVELLSDVPIRYNRNARKAMLGMNKAKDVPSK 167



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 87  IMSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVD 248
           +   ++  I +V A RTPF   G VF++  A +LQ  A    +++  +   Q+D
Sbjct: 18  VAKKNMPNIVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQLD 71


>AC024696-11|AAK84510.1|  401|Caenorhabditis elegans Hypothetical
           protein F07B7.14 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 267 TWPXTCCRPEPGTLRPPSRHQP 202
           TWP +C RPEP +   P  + P
Sbjct: 74  TWPASCRRPEPRSSSQPKENPP 95



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 267 TWPXTCCRPEPGTLRPPSRHQP 202
           TWP +C RPEP +   P  + P
Sbjct: 47  TWPASCRRPEPRSSSQPKENLP 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,270,815
Number of Sequences: 27780
Number of extensions: 311830
Number of successful extensions: 780
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)