Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060183.seq
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative ... 53 2e-07
At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative ... 53 2e-07
At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative ... 53 2e-07
At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative ... 53 2e-07
At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative ... 53 2e-07
At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative ... 48 4e-06
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto... 46 2e-05
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto... 46 2e-05
At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative ... 46 3e-05
At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative ... 44 7e-05
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa... 31 0.93
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 2.1
At1g63850.1 68414.m07227 PRLI-interacting factor-related similar... 29 3.8
At1g53050.1 68414.m06007 protein kinase family protein contains ... 29 3.8
>At5g48230.2 68418.m05959 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 403
Score = 52.8 bits (121), Expect = 2e-07
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Frame = +2
Query: 233 PGSGRQHVXGQVISXSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDI 412
P ++ V G V+S + G R AAL AGIP +N++C SG ++++ +AQ I
Sbjct: 54 PALVQEVVFGNVLSANL--GQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSI 111
Query: 413 LTGAAKISVAXGVENMSXAP----FAVRNVRFGTALAPTTPSKDTLW 541
G + VA G+E+MS P A + RFG KD LW
Sbjct: 112 QLGINDVVVAGGMESMSNTPKYLAEARKGSRFGHDSLVDGMLKDGLW 158
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 93 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
S + + + IVG RTP G F G + AT+L ++A ALK A V PA V +
Sbjct: 7 SVNPRDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEV 60
>At5g48230.1 68418.m05958 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 398
Score = 52.8 bits (121), Expect = 2e-07
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Frame = +2
Query: 233 PGSGRQHVXGQVISXSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDI 412
P ++ V G V+S + G R AAL AGIP +N++C SG ++++ +AQ I
Sbjct: 49 PALVQEVVFGNVLSANL--GQAPARQAALGAGIPNSVICTTVNKVCASGMKAVMIAAQSI 106
Query: 413 LTGAAKISVAXGVENMSXAP----FAVRNVRFGTALAPTTPSKDTLW 541
G + VA G+E+MS P A + RFG KD LW
Sbjct: 107 QLGINDVVVAGGMESMSNTPKYLAEARKGSRFGHDSLVDGMLKDGLW 153
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +3
Query: 90 MSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
M+ + IVG RTP G F G + AT+L ++A ALK A V PA V +
Sbjct: 1 MNVDESDVCIVGVARTPMGGFLGSLSSLPATKLGSLAIAAALKRANVDPALVQEV 55
>At5g47720.3 68418.m05894 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMSXAPFAVR 484
R AAL AGIP IN++C +G +S++ ++Q I G I VA G+E+MS P +
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPKYLP 137
Query: 485 NVRFGTALAPTT----PSKDTLW 541
+ R G+ L T KD LW
Sbjct: 138 DARRGSRLGHDTVVDGMMKDGLW 160
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 93 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ +
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEV 62
>At5g47720.2 68418.m05896 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 415
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMSXAPFAVR 484
R AAL AGIP IN++C +G +S++ ++Q I G I VA G+E+MS P +
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPKYLP 137
Query: 485 NVRFGTALAPTT----PSKDTLW 541
+ R G+ L T KD LW
Sbjct: 138 DARRGSRLGHDTVVDGMMKDGLW 160
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 93 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ +
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEV 62
>At5g47720.1 68418.m05893 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 405
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMSXAPFAVR 484
R AAL AGIP IN++C +G +S++ ++Q I G I VA G+E+MS P +
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPKYLP 137
Query: 485 NVRFGTALAPTT----PSKDTLW 541
+ R G+ L T KD LW
Sbjct: 138 DARRGSRLGHDTVVDGMMKDGLW 160
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 93 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ +
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEV 62
>At5g47720.4 68418.m05895 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative strong similarity to
Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus
sativus] GI:1542941; contains InterPro accession
IPR002155: Thiolase
Length = 406
Score = 48.4 bits (110), Expect = 4e-06
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMSXAP---- 472
R AAL AGIP IN++C +G +S++ ++Q I G I VA G+E+MS P
Sbjct: 78 RQAALGAGIPYSVICTTINKVCAAGMKSVMLASQSIQLGLNDIVVAGGMESMSNVPKYLP 137
Query: 473 -FAVRNVRFGTALAPTTPSKDTLW 541
+ R R G KD LW
Sbjct: 138 DASRRGSRLGHDTVVDGMMKDGLW 161
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 93 SASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSM 254
S + + +VG RTP G F G + +AT L +IA ALK A V PA V+ +
Sbjct: 9 SLQPRDVCVVGVARTPIGDFLGSLSSLTATRLGSIAIQAALKRAHVDPALVEEV 62
>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 457
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/53 (43%), Positives = 29/53 (54%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMS 463
R AA AG P PV +NR C SG Q++ + A I G I + GVE+MS
Sbjct: 116 RVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMS 168
>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
3-ketoacyl-CoA thiolase 1 (PKT1) identical to
3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
GI:3169568
Length = 414
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/53 (43%), Positives = 29/53 (54%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMS 463
R AA AG P PV +NR C SG Q++ + A I G I + GVE+MS
Sbjct: 73 RVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMS 125
>At1g04710.1 68414.m00468 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 443
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMSXAP 472
R AA AG P+ P+ +NR C SG Q++ + A I G I + G+E+M+ P
Sbjct: 109 RMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNP 164
>At2g33150.1 68415.m04062 acetyl-CoA C-acyltransferase, putative /
3-ketoacyl-CoA thiolase, putative similar to
3-ketoacyl-CoA thiolase (E.C. 2.3.1.16) from
[Arabidopsis thaliana] GI:2981616, [Cucumis sativus]
GI:393707, [Cucurbita cv. Kurokawa Amakuri] GI:1694621;
contains InterPro accession IPR002155: Thiolase
Length = 462
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +2
Query: 305 RHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAXGVENMSXAPFA 478
R AA AG P+ V +NR C SG Q++ + A I G I + G+E+M+ P A
Sbjct: 117 RMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMA 174
>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 396
Score = 30.7 bits (66), Expect = 0.93
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 418 RRSQDLSSGGSREHVAXALRGQKREVRHGSGTNYAF 525
R ++ S+G E+V A RG++ EVR G+G ++F
Sbjct: 324 RNVRETSNGNVVENVGNADRGREDEVRSGNGRRFSF 359
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 182 RTADDSHGWCLEGGRSVPGSGRQHVXGQVISXSQTDGIYTPRHAALKAGIPQEKPV 349
+T + HG+ G SVPGS + G +S T + A +GIP PV
Sbjct: 207 QTIPNGHGYTAVQGYSVPGSHILQLGGPTVSTMTTSSM-PALQAPYPSGIPGPAPV 261
>At1g63850.1 68414.m07227 PRLI-interacting factor-related similar to
PRLI-interacting factor G (GI:11139264) [Arabidopsis
thaliana]; contains Prosite PS00037: Myb DNA-binding
domain repeat signature 1
Length = 548
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 211 APTVAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPLTEADMIQNYTYPVN 62
+PT+ + +S AD + K P ++ NGVL +P+ + A T VN
Sbjct: 56 SPTLFEMMASEADTIGKVPVQIHNGVLPSPSSSSSSSSAAATAARTTNVN 105
>At1g53050.1 68414.m06007 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 694
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 224 RSVPGSGRQHVXGQVISXSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGS 376
RS GR++ S D P AA + G PQ++ G+ RL GS
Sbjct: 549 RSASAKGRRNYQDSQKVSSIADYSAMPGFAATRTGAPQQETCRGMTRLPGS 599
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,204
Number of Sequences: 28952
Number of extensions: 293512
Number of successful extensions: 799
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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