Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060182.seq
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    42   0.014
UniRef50_Q08BD9 Cluster: Zgc:153909; n=4; Danio rerio|Rep: Zgc:1...    35   2.1  
UniRef50_UPI0000DD8483 Cluster: PREDICTED: hypothetical protein;...    33   6.5  
UniRef50_Q4PH04 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_Q188R7 Cluster: Putative iron-sulfur flavoprotein; n=1;...    33   8.6  
UniRef50_Q8SV02 Cluster: Putative uncharacterized protein ECU07_...    33   8.6  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 41.9 bits (94), Expect = 0.014
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -1

Query: 402 AGWWYLPARTHKRSYHQ 352
           A WWYLPARTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q08BD9 Cluster: Zgc:153909; n=4; Danio rerio|Rep:
           Zgc:153909 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 262

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 455 RLPHPSNRNALL-LHGRNRQGGGTYPRGLTRG-PTTSNXNQKPGK 327
           RL HP  R  ++ LHG+ R GGG   RG+ +G  T  + N+ PGK
Sbjct: 92  RLGHPVGRGGMMGLHGQMR-GGGRSRRGMVKGFCTKKSVNRLPGK 135


>UniRef50_UPI0000DD8483 Cluster: PREDICTED: hypothetical protein;
           n=2; Homo sapiens|Rep: PREDICTED: hypothetical protein -
           Homo sapiens
          Length = 338

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 471 SSIVTTAAPPFKPKRITASRQK*AGWWYLPARTHKRSYHQ*PXP 340
           +S+ T++APP +P+ +T+S     G+   P   H+ S H  P P
Sbjct: 210 ASLSTSSAPPPRPRPLTSSGGGGCGYLRAPPSAHRNSGHAGPAP 253


>UniRef50_Q4PH04 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 794

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 666 GFWILRTNVTYNSTENYEAECDKALXKFIYCLDELTAP 553
           G W+   N T  S E  EAE D+ L KF +  D L  P
Sbjct: 609 GGWVNDMNTTIKSVEELEAEEDEELLKFFHKYDSLDKP 646


>UniRef50_Q188R7 Cluster: Putative iron-sulfur flavoprotein; n=1;
           Clostridium difficile 630|Rep: Putative iron-sulfur
           flavoprotein - Clostridium difficile (strain 630)
          Length = 225

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 654 LRTNVTYNS-TENYEAECDKALXKFIYCLDELTAPPGIKWLLEPIDIYNVMR 502
           ++T    N  TE  E++  K   KFIYC++E   PP +  +   I I  V++
Sbjct: 151 IKTGFNQNPITEKVESKIQKVSKKFIYCIEEKKNPPVLSQIYNFIAINAVLK 202


>UniRef50_Q8SV02 Cluster: Putative uncharacterized protein
           ECU07_0900; n=1; Encephalitozoon cuniculi|Rep: Putative
           uncharacterized protein ECU07_0900 - Encephalitozoon
           cuniculi
          Length = 372

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 440 SNRNALLLHGRNRQGGGTYPRGL 372
           + RNALL+HG N  G  TY RGL
Sbjct: 112 TKRNALLVHGFNGSGNSTYMRGL 134


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,513,943
Number of Sequences: 1657284
Number of extensions: 13996493
Number of successful extensions: 25770
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25767
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)