Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060182.seq
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    27   2.5  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    27   3.4  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.4  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.8  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 389 YHHPAYFCREAVMRFGLKGGAAVVTILETLELMSQGG 499
           +  P+ F  E V+   L GG AVV +  TLE + Q G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
 Frame = -3

Query: 472 LKYSYNGCPTLQTETHYCFTAEIGRVVVPTRADSQEVLPPVTXTRNRESATYFIPSELLE 293
           L +S  G P  +T T  C    +   V+ + A   +    V     R +      + + +
Sbjct: 130 LDWSPQGIPWTETSTGICI---LQATVLSSLAQYAQANDEVAYQYVRSAIGLIQNANIGK 186

Query: 292 CVLPSLFTXCF*YHPILSQ--VIQCLIQQSNGIGNNXLTT*LQYVVLHRLTSVLYFLAT 122
             LP L   C   + + +Q  V  C  Q       N LTT L Y   H+  ++LY L T
Sbjct: 187 KPLPELTRWCDLAYSLYAQMSVSACSSQLERA---NILTTCLSYFTEHKSVNLLYKLVT 242


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 439 QTETHYCFTAEIGRVVVPTRADSQEVLPPVTXTRNRESATYFIPSELLECVLP 281
           QTE    FT ++   V PT   S  V      + + E++T+ + S  +  ++P
Sbjct: 19  QTEYTPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVP 71


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -2

Query: 179 ITTICCASQTN*CSLFPCYYVSL*STTYCSYV---VSLLLPISLHYFFNSHPI 30
           I T+C     +  S F   +V +    +CS+V   VSL +P S+  FF+S P+
Sbjct: 298 IETLCEFLSESAVSPFGQTFVEI-EDPFCSFVYFYVSLRVPCSIQLFFDSVPL 349


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -1

Query: 531 EPIDIYNVMRHPP*DISS----KVSSIVTTAAPPFKPKRITASRQ 409
           EP+ + N     P  + S    K SSI+  + PPF+ + IT S +
Sbjct: 600 EPVSLENQSHISPPQVDSQSEYKESSILAPSNPPFETESITDSTE 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,160
Number of Sequences: 5004
Number of extensions: 58249
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)