Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060182.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         29   4.6  
08_02_1461 - 27299891-27301870                                         28   8.0  
04_01_0128 + 1398190-1398480,1399245-1399505                           28   8.0  
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143...    28   8.0  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 471 SSIVTTAAPPFKPKRITA 418
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 446 HPSNRNALLLHGRNRQGGGTYPRGLTRGPTTS 351
           H ++    LL GR R GGG + RGL   P  S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313


>04_01_0128 + 1398190-1398480,1399245-1399505
          Length = 183

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 440 SNRNALLLHGRNRQGGGTYPRGLTRGPTTSNXNQKP 333
           +  NA   HGR        PR ++  PTT+N +  P
Sbjct: 57  NGNNAEDHHGRQAAAAAVVPRAVSTRPTTTNPSSSP 92


>02_04_0056 +
           19313422-19313967,19314035-19314168,19314263-19314398,
           19314870-19314923,19314995-19315135,19315220-19315546,
           19315647-19315916,19316080-19316226,19316890-19317045,
           19317223-19317290,19318210-19318309,19318696-19318985,
           19319074-19319274,19319840-19319902,19320263-19320356,
           19320964-19321035,19321979-19322077,19322254-19322376
          Length = 1006

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 463 SYNGCPTLQTETHYCFTAE-IGRVVVPTRADSQEVLPPVTXTRNRESATYFIP-SELLEC 290
           S  GC T Q  TH C  A  +G + V    D +++  P + ++ R+  T  I    L+ C
Sbjct: 468 SSKGCITTQHSTHICEEASGLGELPVQPHDDVKKLAIPFSFSKLRKPKTPLIAGGNLIVC 527

Query: 289 VLPSL 275
            +  L
Sbjct: 528 PMTLL 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,654,517
Number of Sequences: 37544
Number of extensions: 401169
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)