Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060182.seq
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               31   0.87 
SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09)                 28   8.1  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_49711| Best HMM Match : SWIM (HMM E-Value=0.068)                    28   8.1  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     28   8.1  

>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 482 ALRSQV*LQRLPHPSNRNALLLHGRNRQ 399
           ALR Q  +QR P P+ RN++ LHG   Q
Sbjct: 23  ALRQQNQVQRRPEPTPRNSIFLHGLRAQ 50


>SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09)
          Length = 418

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 176 TTICCASQT-N*CSLFPCYYVSL*STTYCSYVVSLLLPISLHYFFNSHPILSQVI 15
           +T+C  +   N CSLF  YYV L     CS V+SL++     Y    +P+  Q I
Sbjct: 166 STLCRLNNCFNNCSLFVTYYVVLCIGACCS-VISLVMLSLERYIALQYPLRYQDI 219


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 182 NITTICCASQTN*CSLFPCYYVSL*STTYC-SYVVSLLLPISL 57
           ++T  CC S T  C L    Y  L S  YC S  V LLL I++
Sbjct: 189 SVTVHCCLSVTV-CLLLSVCYCPLLSVRYCLSVTVCLLLSITV 230


>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 188 THNITTICCASQTN*CSLFPCYYVSL*STTY 96
           T N+ T CC+S+    S FPC Y+     TY
Sbjct: 331 TVNLQTPCCSSEAWARSYFPCKYIYAVFHTY 361


>SB_49711| Best HMM Match : SWIM (HMM E-Value=0.068)
          Length = 245

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 188 THNITTICCASQTN*CSLFPCYYVSL*STTY 96
           T N+ T CC+S+    S FPC Y+     TY
Sbjct: 25  TVNLQTPCCSSEAWARSYFPCKYIYAVFHTY 55


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 409 EIGRVVVPTR-ADSQEVLPPVTXTRNRESATYFIPSELLECVLP 281
           E G  V+PTR   S +VLP    TR R S TY   +++++C  P
Sbjct: 234 EPGSKVLPTRQRTSGKVLPTRKRTR-RLSVTYHAKNQVVKCYQP 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,424,823
Number of Sequences: 59808
Number of extensions: 464957
Number of successful extensions: 808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)