Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060182.seq
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    28   7.2  
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    28   7.2  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    27   9.5  

>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
           preproprotein protein.
          Length = 1042

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 151 VCEAQHIVVML*VYYYRSHWTVELDIELLGRVLG 252
           +C A+  V++  V  + +HW  EL  + +G +LG
Sbjct: 337 ICTARSAVIVKGVEQFATHWNGELLAQSIGHLLG 370


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y37D8A.13 protein.
          Length = 1042

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 151 VCEAQHIVVML*VYYYRSHWTVELDIELLGRVLG 252
           +C A+  V++  V  + +HW  EL  + +G +LG
Sbjct: 337 ICTARSAVIVKGVEQFATHWNGELLAQSIGHLLG 370


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 400 RVVVPTRADSQEVLPPVTXTRNRESATYFIPSELLE 293
           R V P R+ S   LPP   T NRE+     P ++++
Sbjct: 298 RDVTPARSPSPPPLPPPITTANRETQADAPPPQIIQ 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,835,586
Number of Sequences: 27780
Number of extensions: 340086
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)