Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060182.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08390.1 68418.m00988 transducin family protein / WD-40 repea...    28   5.0  
At5g53330.1 68418.m06628 expressed protein                             28   6.7  

>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
           family protein similar to katanin p80 subunit
           [Strongylocentrotus purpuratus] GI:3005601; contains
           Pfam profile PF00400: WD domain, G-beta repeat
          Length = 871

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -2

Query: 401 QGGGTYPRGLTRGPTTSNXNQKPGKCHIFYSF*IVGVCATISLYXVFLISPNTLPSNSM 225
           Q G TYP        T+    K  KC +F  F    +    S     + +PN+ PSN +
Sbjct: 633 QDGNTYPSDEGGSWDTAERTNKESKCRVFGRFNSRSLGPVSSSSGGNMTAPNSRPSNML 691


>At5g53330.1 68418.m06628 expressed protein
          Length = 221

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 410 RNRQGGGTYPRGLTRGPTTSNXNQKPGKCHIFYSF*IVG 294
           RN+ GG +YPR +   P+TS     P   H  Y +  +G
Sbjct: 6   RNKSGGPSYPRPMYGPPSTS---PSPSSNHPMYGYPKIG 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,805,919
Number of Sequences: 28952
Number of extensions: 311662
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)