Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060181.seq
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    32   0.064
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         27   2.4  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    27   2.4  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   2.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   4.2  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    26   4.2  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   4.2  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.5  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   5.5  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   5.5  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   9.7  
SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces...    25   9.7  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 32.3 bits (70), Expect = 0.064
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 353 RIFFNNTVFSNYNRSAFSYNADSRMNNCTSSYGISPSKVQSSQTVAPGRILML 195
           R+ + NTV S+    AF+YN D++  NC  S+      +  ++ V  G  L+L
Sbjct: 771 RVLWINTVQSDSTIKAFTYNVDTKQLNCIKSWKYKTVCLVFAEAVIFGSHLLL 823


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -2

Query: 464 VTIDRLQFASNFENIVCTYKQWLWGILLFITLFMY 360
           +T+ + +F ++F N+   +  WL   +LF  + +Y
Sbjct: 61  ITLAKTEFKNSFSNLHFFFLFWLLNFILFFRIHLY 95


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 26  KSLIMFKKNIEIDQFF*PFHQVCDAIEI 109
           ++L + KKN+ ID  F PF++ C + +I
Sbjct: 68  EALEVLKKNVAIDPSFKPFYEWCKSQDI 95


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 307 PSAIMLTLG*ITVPPPMVYHPLRYSLRRQLLRV 209
           P AI LTL  I + P   Y+PLR  L + L+ +
Sbjct: 338 PIAINLTLDCIRLIPTEQYYPLRLHLLKSLVNI 370


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 148 EFFNLPKILFFFENFYGITNLVKRSKKLINFNIFFE 41
           +F+NLPK+  FFE   G+T L   +  +    IFFE
Sbjct: 786 QFYNLPKVRPFFEK--GVT-LFSANTAIWEVYIFFE 818


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 124 LFFFENFYGITNLVKRSKKLINFNIFF 44
           + FF+ FY I ++++ S K+I+F   F
Sbjct: 95  ILFFKRFYLINSVMEYSPKIISFTSLF 121


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 512 VKVGSGCVIGAACTLTAPQILADNTVI 592
           VK+G+ C I     + A  ++ DNT+I
Sbjct: 388 VKIGNNCSIEDGAIVAAGVVIGDNTII 414


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -2

Query: 377 ITLFMYYSRIFFNNTVFSNYNRSAFSYNADSRMNNCTSSYGISPSKVQSSQT 222
           +  F+Y+  IF     F NY+    S ++ S  ++ T+   +S  K  +  T
Sbjct: 1   MNFFLYFRTIFLIQLYFFNYSTFGCSASSTSVQSDTTNQVSVSCPKYTTIYT 52


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +1

Query: 412 VHTMFSKLLANWSLSMVTSVKVMFLNADLLLERSQSWQWLCNRSSLYINSSPDISRQYSD 591
           V+  FS      S+S + +  ++F     LL    +W+    R S Y+NSSP   ++++ 
Sbjct: 170 VNQFFSLRYPALSISFIVAQLILF-PLGKLLNLLPNWKIGYGRFSFYLNSSPFNVKEHAA 228

Query: 592 LGLRAS 609
           + +  S
Sbjct: 229 ITIAVS 234


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -2

Query: 377 ITLFMYYSRIFFNNTVFSNYNRSAFSYNADSRMNNCTSSYGISPSKVQSSQT 222
           +  F+Y+  IF     F NY+    S ++ S  ++ T+   +S  K  +  T
Sbjct: 1   MNFFLYFRTIFLIQLYFFNYSTFGCSASSTSVQSDTTNQVSVSCPKYTTIYT 52


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 419 VCTYKQWLWGILL-FITLFMYYSRIFFNNTVFSNYNRSA 306
           V T   WLWG L+ F T F+  S  F    +F+  N  A
Sbjct: 406 VATTGNWLWGFLISFFTPFITNSIGFKYGYIFAACNLCA 444


>SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 487 NADLLLERSQSWQWLCNRSSLYINSSPDISRQY 585
           N D L++ S+  +   NRS   I S+ D ++QY
Sbjct: 39  NKDRLVKMSRDVEMYANRSYKEIPSADDFAKQY 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,014
Number of Sequences: 5004
Number of extensions: 47269
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)