Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060181.seq
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973...    28   5.7  

>11_06_0047 +
           19595904-19596185,19596284-19596424,19597195-19597307,
           19597970-19598049,19598557-19598720,19598931-19599060,
           19599155-19599254,19599452-19599500,19599775-19599849,
           19600026-19600124,19600745-19600823,19600897-19601045,
           19601334-19601393,19601490-19601684
          Length = 571

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -2

Query: 479 ITFTDVTIDRLQFASNFENIVCTYKQWLWGI--LLFITLFMYY 357
           I    + ++ + FA NF  I      W WG   L F +L M+Y
Sbjct: 291 IVLITLFLNSIIFAPNFSRITAAVGIWSWGAISLAFASLVMFY 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,824
Number of Sequences: 37544
Number of extensions: 274913
Number of successful extensions: 769
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)