Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060181.seq
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14880| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20)          37   0.013
SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06)                   29   4.4  
SB_58712| Best HMM Match : Extensin_2 (HMM E-Value=2.7)                29   4.4  
SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)               29   4.4  
SB_52687| Best HMM Match : Myb_DNA-binding (HMM E-Value=2.7e-09)       28   5.9  
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_14880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
 Frame = +3

Query: 240 LRG*YTIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXXSTIIH--KKSDKQENPPK--PLF 407
           ++G   IG  TV+HP+                      TII+  +  + +E PP+   + 
Sbjct: 25  IKGEVIIGSKTVVHPKARIIAEAGPIIIGDNNLIEEQVTIINPLQVEENEEVPPERIVMH 84

Query: 408 IGAHNVFEVACKLESIYGHVGESNVFECRSFVGEKSKLA 524
           IG +NVFEV    E++   +G++N+ E +S VG ++ L+
Sbjct: 85  IGCNNVFEVGSLCEAV--KIGDNNILEAKSRVGRQTVLS 121



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +2

Query: 506 REVKVGSGCVIGAACTLTAPQILADNTVIWG 598
           R+  +  GCVIGA C +T+ + + +NTVI+G
Sbjct: 116 RQTVLSHGCVIGARCEVTSQETIPENTVIYG 146


>SB_53041| Best HMM Match : E1-E2_ATPase (HMM E-Value=5.7e-20)
          Length = 704

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 488 MQIFCWREVKVGSGCVIGAACTLTAPQILADNTVIWGSEHHVRRSFRETALS 643
           M+  C+++VKVG  CVIG    + A  IL +NT +   E  + +  R +  S
Sbjct: 165 MKEICYQDVKVGDLCVIGPGSIIPADGILVENTELTTDESSLNKESRASKTS 216


>SB_16544| Best HMM Match : Arm (HMM E-Value=1.6e-06)
          Length = 841

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 448 SLSMVTSVKVMFLNADLLLERSQSWQWLCNRSSLYINSSPD 570
           +L M+TS+K   L  DLL++  +S++   N+S+   N   D
Sbjct: 641 ALIMLTSIKARQLQEDLLIKTYESYRHRVNQSAFSDNQGSD 681


>SB_58712| Best HMM Match : Extensin_2 (HMM E-Value=2.7)
          Length = 349

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 413 TYKQWLWGILLFITLFMYYSRIFFNNTVFSNYNRSAFSYNADSRMNNCTSSYGI 252
           T+K  L+G+     L    SR     T++  YN +   YN+ +R  +  + YG+
Sbjct: 201 THKATLYGVYNTTELVYDSSRNTHKATLYGVYNTTELVYNSSTRNTHKATLYGV 254


>SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)
          Length = 443

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 427 KTLCAPINNGFGGFSC 380
           KT CAPINN   G++C
Sbjct: 88  KTYCAPINNSDAGYNC 103


>SB_52687| Best HMM Match : Myb_DNA-binding (HMM E-Value=2.7e-09)
          Length = 166

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 310 PPSAIMLTLG*ITVPPPMVYHPLRY 236
           PP  + L  G +T+PP MV H  RY
Sbjct: 5   PPGMVTLPPGMVTLPPGMVTHFTRY 29


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 395  WG--ILLFITLFMYYSRIFFNNTVFSNY 318
            WG  I  FI  F+YYS+ FFN     +Y
Sbjct: 943  WGSIIFYFIFYFIYYSQFFFNRGPQEHY 970


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,575,921
Number of Sequences: 59808
Number of extensions: 321130
Number of successful extensions: 778
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)