Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060181.seq
(660 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D84145-1|BAA19984.1| 190|Homo sapiens WS-3 protein. 51 4e-06
CR456851-1|CAG33132.1| 190|Homo sapiens DCTN6 protein. 51 4e-06
BC013175-1|AAH13175.1| 190|Homo sapiens dynactin 6 protein. 51 4e-06
AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein pro... 32 2.1
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 32 2.1
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 31 2.8
AF074086-6|AAD21096.1| 333|Homo sapiens protease protein. 31 2.8
AF074086-2|AAF88166.1| 333|Homo sapiens protease protein. 31 2.8
>D84145-1|BAA19984.1| 190|Homo sapiens WS-3 protein.
Length = 190
Score = 50.8 bits (116), Expect = 4e-06
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = +3
Query: 240 LRG*YTIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXXSTIIHKKSDK----QENP-PKPL 404
+RG TIG TVIHP+ + II+ D E+P PKP+
Sbjct: 23 IRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPM 82
Query: 405 FIGAHNVFEVACKLESIYGHVGESNVFECRSFVG 506
IG +NVFEV C +++ +G++NV E +++VG
Sbjct: 83 IIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVG 114
Score = 39.5 bits (88), Expect = 0.010
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2
Query: 506 REVKVGSGCVIGAACTLTAPQILADNTVIWGSE 604
R V + SGC+IGA C L +++ +NTVI+G++
Sbjct: 115 RNVILTSGCIIGACCNLNTFEVIPENTVIYGAD 147
>CR456851-1|CAG33132.1| 190|Homo sapiens DCTN6 protein.
Length = 190
Score = 50.8 bits (116), Expect = 4e-06
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = +3
Query: 240 LRG*YTIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXXSTIIHKKSDK----QENP-PKPL 404
+RG TIG TVIHP+ + II+ D E+P PKP+
Sbjct: 23 IRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPM 82
Query: 405 FIGAHNVFEVACKLESIYGHVGESNVFECRSFVG 506
IG +NVFEV C +++ +G++NV E +++VG
Sbjct: 83 IIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVG 114
Score = 39.5 bits (88), Expect = 0.010
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2
Query: 506 REVKVGSGCVIGAACTLTAPQILADNTVIWGSE 604
R V + SGC+IGA C L +++ +NTVI+G++
Sbjct: 115 RNVILTSGCIIGACCNLNTFEVIPENTVIYGAD 147
>BC013175-1|AAH13175.1| 190|Homo sapiens dynactin 6 protein.
Length = 190
Score = 50.8 bits (116), Expect = 4e-06
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = +3
Query: 240 LRG*YTIGGGTVIHPRVSXXXXXXXXXXXXXXXXXXXSTIIHKKSDK----QENP-PKPL 404
+RG TIG TVIHP+ + II+ D E+P PKP+
Sbjct: 23 IRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPM 82
Query: 405 FIGAHNVFEVACKLESIYGHVGESNVFECRSFVG 506
IG +NVFEV C +++ +G++NV E +++VG
Sbjct: 83 IIGTNNVFEVGCYSQAM--KMGDNNVIESKAYVG 114
Score = 39.5 bits (88), Expect = 0.010
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2
Query: 506 REVKVGSGCVIGAACTLTAPQILADNTVIWGSE 604
R V + SGC+IGA C L +++ +NTVI+G++
Sbjct: 115 RNVILTSGCIIGACCNLNTFEVIPENTVIYGAD 147
>AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein
protein.
Length = 1117
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 600 EPQITVLSANIWGAVNVQ--AAPITQPLPTLTSLQQKICIQKHY 475
+P IT + N+WG +Q A IT P P + QKI ++ Y
Sbjct: 860 QPMITSIPLNLWGRDLLQQWGAEITMPAPLYSPTSQKIMTKRGY 903
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 31.9 bits (69), Expect = 2.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 600 EPQITVLSANIWGAVNVQ--AAPITQPLPTLTSLQQKICIQKHY 475
+P IT + N+WG +Q A IT P P + QKI ++ Y
Sbjct: 860 QPMITSIPLNLWGRDLLQQWGAEITMPAPLYSPTSQKIMTKRGY 903
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein
protein.
Length = 1879
Score = 31.5 bits (68), Expect = 2.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 600 EPQITVLSANIWGAVNVQ--AAPITQPLPTLTSLQQKICIQKHY 475
+P IT + N+WG +Q A IT P P+ + QKI + Y
Sbjct: 860 QPMITSIPLNLWGRDLLQQWGAEITMPAPSYSPTSQKIMTKMGY 903
>AF074086-6|AAD21096.1| 333|Homo sapiens protease protein.
Length = 333
Score = 31.5 bits (68), Expect = 2.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 600 EPQITVLSANIWGAVNVQ--AAPITQPLPTLTSLQQKICIQKHY 475
+P IT + N+WG +Q A IT P P+ + QKI + Y
Sbjct: 258 QPMITSIPLNLWGRDLLQQWGAEITMPAPSYSPTSQKIMTKMGY 301
>AF074086-2|AAF88166.1| 333|Homo sapiens protease protein.
Length = 333
Score = 31.5 bits (68), Expect = 2.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 600 EPQITVLSANIWGAVNVQ--AAPITQPLPTLTSLQQKICIQKHY 475
+P IT + N+WG +Q A IT P P+ + QKI + Y
Sbjct: 258 QPMITSIPLNLWGRDLLQQWGAEITMPAPSYSPTSQKIMTKMGY 301
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,403,958
Number of Sequences: 237096
Number of extensions: 1627479
Number of successful extensions: 2894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2891
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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