Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060181.seq
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96047-10|CAH04703.1|  195|Caenorhabditis elegans Hypothetical p...    34   0.078
Z80215-19|CAH19104.1|  195|Caenorhabditis elegans Hypothetical p...    34   0.078
Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z49907-11|CAF31469.1|  844|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z49907-10|CAC42250.1|  875|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z49907-9|CAA90092.1|  880|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z48367-8|CAF31471.1|  844|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z48367-7|CAC42266.1|  875|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z48367-6|CAA88325.1|  880|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF319613-1|AAG49523.1|  880|Caenorhabditis elegans CLC-type chlo...    28   6.8  
AF173171-1|AAF13164.1|  844|Caenorhabditis elegans CLC chloride ...    28   6.8  
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z27078-9|CAA81586.2|  378|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z27078-4|CAB76843.1|  373|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z19153-8|CAD45582.1|  378|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AY303580-1|AAP57302.1|  373|Caenorhabditis elegans cell death-re...    27   8.9  
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ...    27   8.9  
AF220525-1|AAF43008.1|  352|Caenorhabditis elegans DNAse II homo...    27   8.9  

>Z96047-10|CAH04703.1|  195|Caenorhabditis elegans Hypothetical
           protein DY3.8 protein.
          Length = 195

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 407 KQWLWGILLFITLFMYYSRIFFNNTVFSNYNRSAFSYNADSRM 279
           K+W+WG LL+++  M+Y  +F   TV   ++R  +  N  S M
Sbjct: 89  KKWVWGGLLYLSNIMFYV-LFMGLTVMGQFSRYHYDKNRVSNM 130


>Z80215-19|CAH19104.1|  195|Caenorhabditis elegans Hypothetical
           protein DY3.8 protein.
          Length = 195

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 407 KQWLWGILLFITLFMYYSRIFFNNTVFSNYNRSAFSYNADSRM 279
           K+W+WG LL+++  M+Y  +F   TV   ++R  +  N  S M
Sbjct: 89  KKWVWGGLLYLSNIMFYV-LFMGLTVMGQFSRYHYDKNRVSNM 130


>Z92786-4|CAB07206.1|  553|Caenorhabditis elegans Hypothetical
           protein F47H4.7 protein.
          Length = 553

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 23  KKSLIMFKKNIEIDQFF*PFHQVCDAIEIFK 115
           KK +    +NI ++ F  PFH+VC+ +  FK
Sbjct: 391 KKEICSLVENITLEGF--PFHEVCEVLRNFK 419


>Z49907-11|CAF31469.1|  844|Caenorhabditis elegans Hypothetical
           protein B0491.8c protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 506 REVKV-GSGCVIGAACTLTAP 565
           RE+++  SGC +G ACT +AP
Sbjct: 200 REMEMLSSGCAVGIACTFSAP 220


>Z49907-10|CAC42250.1|  875|Caenorhabditis elegans Hypothetical
           protein B0491.8b protein.
          Length = 875

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 506 REVKV-GSGCVIGAACTLTAP 565
           RE+++  SGC +G ACT +AP
Sbjct: 231 REMEMLSSGCAVGIACTFSAP 251


>Z49907-9|CAA90092.1|  880|Caenorhabditis elegans Hypothetical
           protein B0491.8a protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 506 REVKV-GSGCVIGAACTLTAP 565
           RE+++  SGC +G ACT +AP
Sbjct: 231 REMEMLSSGCAVGIACTFSAP 251


>Z48367-8|CAF31471.1|  844|Caenorhabditis elegans Hypothetical
           protein B0491.8c protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 506 REVKV-GSGCVIGAACTLTAP 565
           RE+++  SGC +G ACT +AP
Sbjct: 200 REMEMLSSGCAVGIACTFSAP 220


>Z48367-7|CAC42266.1|  875|Caenorhabditis elegans Hypothetical
           protein B0491.8b protein.
          Length = 875

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 506 REVKV-GSGCVIGAACTLTAP 565
           RE+++  SGC +G ACT +AP
Sbjct: 231 REMEMLSSGCAVGIACTFSAP 251


>Z48367-6|CAA88325.1|  880|Caenorhabditis elegans Hypothetical
           protein B0491.8a protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 506 REVKV-GSGCVIGAACTLTAP 565
           RE+++  SGC +G ACT +AP
Sbjct: 231 REMEMLSSGCAVGIACTFSAP 251


>AF319613-1|AAG49523.1|  880|Caenorhabditis elegans CLC-type
           chloride channel CLH-2b protein.
          Length = 880

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 506 REVKV-GSGCVIGAACTLTAP 565
           RE+++  SGC +G ACT +AP
Sbjct: 231 REMEMLSSGCAVGIACTFSAP 251


>AF173171-1|AAF13164.1|  844|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 506 REVKV-GSGCVIGAACTLTAP 565
           RE+++  SGC +G ACT +AP
Sbjct: 200 REMEMLSSGCAVGIACTFSAP 220


>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical protein
            Y48E1A.1a protein.
          Length = 1737

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 338  NTVFSNYNRSAFSYNADSRMNNCTSSYGISPSKVQSSQT 222
            N +  NY   A S    + MNN  + YGI  SK   S T
Sbjct: 1601 NLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLT 1639


>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical protein
            Y48E1A.1a protein.
          Length = 1737

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 338  NTVFSNYNRSAFSYNADSRMNNCTSSYGISPSKVQSSQT 222
            N +  NY   A S    + MNN  + YGI  SK   S T
Sbjct: 1601 NLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLT 1639


>Z27078-9|CAA81586.2|  378|Caenorhabditis elegans Hypothetical
           protein K04H4.6b protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 51  ILKLINFFDLFT-KFVMP*KFSKKNRIFGRLKNSEYHLKVNLTS 179
           I + + +++ FT +F +P  F+ +  +  +LKN EY+    LTS
Sbjct: 169 IAQQLFYYNTFTYQFNLPQSFANQFPVLSQLKNKEYNKSPPLTS 212


>Z27078-4|CAB76843.1|  373|Caenorhabditis elegans Hypothetical
           protein K04H4.6a protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 51  ILKLINFFDLFT-KFVMP*KFSKKNRIFGRLKNSEYHLKVNLTS 179
           I + + +++ FT +F +P  F+ +  +  +LKN EY+    LTS
Sbjct: 169 IAQQLFYYNTFTYQFNLPQSFANQFPVLSQLKNKEYNKSPPLTS 212


>Z19153-8|CAD45582.1|  378|Caenorhabditis elegans Hypothetical
           protein K04H4.6b protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 51  ILKLINFFDLFT-KFVMP*KFSKKNRIFGRLKNSEYHLKVNLTS 179
           I + + +++ FT +F +P  F+ +  +  +LKN EY+    LTS
Sbjct: 169 IAQQLFYYNTFTYQFNLPQSFANQFPVLSQLKNKEYNKSPPLTS 212


>AY303580-1|AAP57302.1|  373|Caenorhabditis elegans cell
           death-related nuclease 6 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 51  ILKLINFFDLFT-KFVMP*KFSKKNRIFGRLKNSEYHLKVNLTS 179
           I + + +++ FT +F +P  F+ +  +  +LKN EY+    LTS
Sbjct: 169 IAQQLFYYNTFTYQFNLPQSFANQFPVLSQLKNKEYNKSPPLTS 212


>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
            protein Y48E1A.1a protein.
          Length = 1737

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 338  NTVFSNYNRSAFSYNADSRMNNCTSSYGISPSKVQSSQT 222
            N +  NY   A S    + MNN  + YGI  SK   S T
Sbjct: 1601 NLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLT 1639


>AF220525-1|AAF43008.1|  352|Caenorhabditis elegans DNAse II homolog
           K04H4.6 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 51  ILKLINFFDLFT-KFVMP*KFSKKNRIFGRLKNSEYHLKVNLTS 179
           I + + +++ FT +F +P  F+ +  +  +LKN EY+    LTS
Sbjct: 152 IAQQLFYYNTFTYQFNLPQSFANQFPVLSQLKNKEYNKSPPLTS 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,595,233
Number of Sequences: 27780
Number of extensions: 264921
Number of successful extensions: 731
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)