Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060181.seq
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa...    29   2.7  
At5g28170.1 68418.m03405 hypothetical protein similar to At1g351...    28   6.3  
At2g17090.1 68415.m01973 protein kinase family protein similar t...    27   8.4  

>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles: PF00097 zinc
           finger, C3HC4 type (RING finger), PF01697 Domain of
           unknown function
          Length = 913

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = -2

Query: 425 NIVCTYKQWLWGILLFITLFMYYSRIFFNNTVFSNYNRSAFSYN 294
           ++V +++ + W ++LF+  F+ +S +F     F    RS  S++
Sbjct: 14  DVVVSWRTFFWFVILFVFSFVLFSTMFIFKGKFRPVVRSTISFS 57


>At5g28170.1 68418.m03405 hypothetical protein similar to At1g35110,
           At1g44880, At3g42530, At4g19320, At5g36020, At4g03970,
           At3g43010, At2g10350
          Length = 203

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 109 NFYGITNLVKRSKKLINFNIFFE 41
           N YGITN+  +S  LIN ++ F+
Sbjct: 7   NIYGITNVYGKSPNLINLSLSFK 29


>At2g17090.1 68415.m01973 protein kinase family protein similar to
           Arabidopsis thaliana APK1A [SP|Q06548], APK1B
           [SP|P46573]; contains Pfam profile: PF00069 Protein
           kinase domain
          Length = 465

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 410 YKQWLWGILLFITLFMYYSRIFFNNTVFSNYNR-SAFSYNADSRMNNCTSSYGI 252
           Y+   W I L +  F+  +  + N   F++YN  SA+    D   + C S +G+
Sbjct: 140 YQTMDWSIRLRVAYFVAEALDYCNTAGFASYNNLSAYKVLFDEDGDACLSCFGL 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,522,327
Number of Sequences: 28952
Number of extensions: 237119
Number of successful extensions: 582
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)