Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060179.seq
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   3.1  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   5.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.4  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   9.4  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 620 PHEKLFPFFHWRSPIQAEIET 558
           PH  L P FH  +P  A  ET
Sbjct: 110 PHPYLSPLFHSAAPRTASRET 130


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 54  WSWNVCLRLPLGALFLVP 1
           W W V + L   +LF++P
Sbjct: 180 WKWQVYMTLVSLSLFIIP 197


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 304 FYCIVSILL*HRVPCFFLIIIFNYFMC 384
           FYC + ILL     C   II   +F C
Sbjct: 288 FYCALIILLCIYYFCRAFIIFPTHFYC 314


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 418 KXLNDVIFFLNAFRVSMCPR*KCRHQFASSMQII 519
           + L D+  +LNA+ V +      RH++++  +I+
Sbjct: 69  RNLLDISLYLNAYHVFVTMMTLKRHKWSTLFEIL 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,749
Number of Sequences: 336
Number of extensions: 3290
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)