Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060179.seq
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0314 + 7398247-7400877                                           29   3.4  
02_05_0589 - 30176354-30176829,30176895-30177075                       29   4.5  
01_06_0335 - 28532241-28532579                                         29   4.5  
09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379           28   6.0  

>03_02_0314 + 7398247-7400877
          Length = 876

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 646 LKYIXKHIVRTKNFFPFFTGDPLS 575
           L+++ +H VR+ +F PF   DPLS
Sbjct: 63  LRHLLRHFVRSTSFLPFADLDPLS 86


>02_05_0589 - 30176354-30176829,30176895-30177075
          Length = 218

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 21  LAANVSKHSNSIQIFFFFGPWAEPPTGCSRLGYMGLNDLQSVG 149
           LAA+VS  S ++        WA PPTG     + GL +   VG
Sbjct: 15  LAASVSSSSAALYTVGDARGWAVPPTGSESYNHWGLKNRFRVG 57


>01_06_0335 - 28532241-28532579
          Length = 112

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +3

Query: 3   ARGTAPLAANVSKHSNSIQIFFFFGPWAEPPTGCSRLGYMGLNDLQSVGSRPRAQGILGS 182
           AR +   + ++ + S  +  F   G  +     CS+L   G + L      P+ + I+ S
Sbjct: 36  ARASKKASCDLMQLSPCVSAFSGVGQGSPSSACCSKLKAQGSSCLCLYKDDPKVKRIVSS 95

Query: 183 YRTKRLALSTLVP 221
            RTKR+  +  VP
Sbjct: 96  NRTKRVFTACKVP 108


>09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379
          Length = 377

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 131 RSAKC--WEQTAGPRNFRVLP 187
           ++ KC  WE   GPR+FR+LP
Sbjct: 226 KAGKCEDWEAKCGPRSFRLLP 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,452,154
Number of Sequences: 37544
Number of extensions: 311052
Number of successful extensions: 519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)