Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060179.seq
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)                 29   4.6  
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)
          Length = 619

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 397 FFNHI*YKXLNDVIFFLNAFRVSMCPR*KCRHQFAS 504
           FFN I Y   N   FF  AF+  +CPR +  H  AS
Sbjct: 577 FFNPIIYAFRNR--FFREAFKELLCPRARAVHPIAS 610


>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 235 SDNILGTSVLSASLLVR*DPKIPWARGLLPTLCRSLSPIYPRREHPVGGSAHGPK 71
           SD I+G +      L   +  IP  R   PT+  +  P +PR + P   S H PK
Sbjct: 530 SDTIIGHNPQYNMFLCAIEITIPSERYQEPTIPSTHDPKHPRSQAPTIPSTHDPK 584


>SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 200 RTKHTGTENVIRFCLINNLF 259
           RT H G +  I FCL+N LF
Sbjct: 594 RTYHAGEKQFIDFCLMNRLF 613


>SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1661

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 200 RTKHTGTENVIRFCLINNLF 259
           RT H G +  I FCL+N LF
Sbjct: 931 RTYHAGEKQFIDFCLMNRLF 950


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,489,156
Number of Sequences: 59808
Number of extensions: 377521
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)