Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060179.seq
         (683 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537963-1|CAD97927.1|  476|Homo sapiens hypothetical protein pr...    30   8.8  
AY227112-1|AAO37092.1|  313|Homo sapiens transmembrane transport...    30   8.8  
AY162213-1|AAO11787.1|  476|Homo sapiens proton/amino acid trans...    30   8.8  
AF516142-1|AAP47194.1|  476|Homo sapiens proton-coupled amino ac...    30   8.8  

>BX537963-1|CAD97927.1|  476|Homo sapiens hypothetical protein
           protein.
          Length = 476

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 626 HCPHEKLFPFFHWRSPIQAEIETDLLLSMATLLXNCIICI 507
           + P E + PFF  R+P   E+  DL +    +   CI+ I
Sbjct: 352 YVPAEIIIPFFVSRAPEHCELVVDLFVRTVLVCLTCILAI 391


>AY227112-1|AAO37092.1|  313|Homo sapiens transmembrane transport
           protein protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 626 HCPHEKLFPFFHWRSPIQAEIETDLLLSMATLLXNCIICI 507
           + P E + PFF  R+P   E+  DL +    +   CI+ I
Sbjct: 189 YVPAEIIIPFFVSRAPEHCELVVDLFVRTVLVCLTCILAI 228


>AY162213-1|AAO11787.1|  476|Homo sapiens proton/amino acid
           transporter 1 protein.
          Length = 476

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 626 HCPHEKLFPFFHWRSPIQAEIETDLLLSMATLLXNCIICI 507
           + P E + PFF  R+P   E+  DL +    +   CI+ I
Sbjct: 352 YVPAEIIIPFFVSRAPEHCELVVDLFVRTVLVCLTCILAI 391


>AF516142-1|AAP47194.1|  476|Homo sapiens proton-coupled amino acid
           transporter protein.
          Length = 476

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 626 HCPHEKLFPFFHWRSPIQAEIETDLLLSMATLLXNCIICI 507
           + P E + PFF  R+P   E+  DL +    +   CI+ I
Sbjct: 352 YVPAEIIIPFFVSRAPEHCELVVDLFVRTVLVCLTCILAI 391


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,866,813
Number of Sequences: 237096
Number of extensions: 1845816
Number of successful extensions: 2916
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2916
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)