Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060178.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   1.9  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    26   4.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.4  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   4.4  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    26   4.4  
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    25   7.8  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
 Frame = +3

Query: 69   KVIYGSADGFHAVDLDTATVYDIYIPKHGSII----PHCIVPLP--NSNGVQLLLCYDNE 230
            K+  G   GF  V LD      +  P   S+        + P+     NG + LLCY   
Sbjct: 1164 KLCVGCTRGFEVVSLDNLETQSLLDPADTSLEFVEKKENVKPIAIYRMNGGEFLLCYSQF 1223

Query: 231  GVYVNTYG 254
              YVN  G
Sbjct: 1224 AFYVNRDG 1231


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 500 LNKPEWPTGSNEIRQTSLICDFLCAVPVRTCSYCTIKMPVV 622
           L  PE  T  +++RQ S I + + A P +     T+K P V
Sbjct: 255 LQTPEGKTQLDQVRQISKIAEQIGATPSQLALAWTLKNPYV 295


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 76  FMVLQMASMLLIWTLPQYMIFIFQNMDQL 162
           F+ L    ++L+WT+P   I +F N+D +
Sbjct: 445 FITLVTFMIILLWTVPVGAIAVFINLDTI 473


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 376 STFNRPNLYCFVSPAHDL 323
           S+FNRPNL+  + P  DL
Sbjct: 711 SSFNRPNLFYEIKPKKDL 728


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 424 KFESLCLLVHKNAVKMSTFNRPNLYCFVSPAHDLSC 317
           K  S  L  HKN V   + +  N Y F S +HD +C
Sbjct: 345 KIVSHTLSGHKNLVSGLSASPENPYMFASVSHDNTC 380


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 75  IYGSADGFHAVDLDTATVY 131
           IYG  +G H + LD   VY
Sbjct: 75  IYGKREGIHIISLDQTMVY 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,608
Number of Sequences: 5004
Number of extensions: 70674
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)