Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060178.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0092 - 20714102-20717902                                         34   0.12 
09_04_0295 - 16454862-16455035,16455122-16455264,16455393-164559...    28   8.0  
02_02_0675 + 12845980-12846111,12846211-12846363,12846954-128471...    28   8.0  
02_02_0309 + 8833709-8834044,8834135-8834289,8834427-8834511,883...    28   8.0  

>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 431  ERNDKVFFSSAKGGSSCQIYFMTLNKPEWPTGSNEIRQTSLICDFLCAVPVRTC 592
            +R+D++ F   K      ++   LN  EW TGS++ R T   C  LC + +R C
Sbjct: 894  QRSDQIMFPKLKR----LVFEDVLNCTEWSTGSSKSRNTVFPC--LCEIQIRNC 941


>09_04_0295 -
           16454862-16455035,16455122-16455264,16455393-16455939,
           16456006-16456332
          Length = 396

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 465 FAEEKNTLSLRSHKNLSLCAFLCIKTPSRCPLSTDRISIALFPQ 334
           FA+E + LS + H ++      C++ P+ C L T+ ++ A   Q
Sbjct: 157 FAQELDALSRQRHPHVLRLMAACLRPPASCFLVTELLTGATLAQ 200


>02_02_0675 +
           12845980-12846111,12846211-12846363,12846954-12847100,
           12847372-12847656
          Length = 238

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 426 KNLSLCAFLCIKTPSRCPLSTDRI 355
           +N  LCAFL  K  SR PL T+ I
Sbjct: 159 ENEKLCAFLVEKALSRLPLGTENI 182


>02_02_0309 +
           8833709-8834044,8834135-8834289,8834427-8834511,
           8835009-8835057,8835098-8835272,8835523-8835593,
           8835723-8836351
          Length = 499

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 155 SMFWNINIIYCGSVQINSMEAI 90
           S FWNI+ +YC +V I +M  I
Sbjct: 256 SPFWNIHPVYCDNVVITNMMII 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,990,275
Number of Sequences: 37544
Number of extensions: 449884
Number of successful extensions: 902
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)