Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060178.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56018| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)               30   2.0  
SB_6169| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_27126| Best HMM Match : ANF_receptor (HMM E-Value=0.015)            28   8.1  
SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)                    28   8.1  

>SB_56018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 35/48 (72%), Positives = 42/48 (87%)
 Frame = +2

Query: 305 AYIGTGQIMGWGNKAIEIRSVESGHLDGVFMHKKAQRLKFLCERNDKV 448
           A +G GQIMGWG KAIE+R+VE+G LDGVFMHK+AQ  +FLCERN+KV
Sbjct: 420 ASVGVGQIMGWGEKAIEVRAVETGLLDGVFMHKRAQTFRFLCERNEKV 467



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/26 (50%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
 Frame = +3

Query: 12  ELQHRPLLVDLTIE-EGTRLKVIYGS 86
           +L+H P+L+++TIE E ++LKV Y S
Sbjct: 318 DLKHNPVLLNMTIEKENSKLKVCYAS 343


>SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)
          Length = 952

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 114 DTATVYDIYIPKHGSIIPHCIVPL--PNSNGVQLLLCYDNEGVYVNTYG 254
           DT+  + +Y     +I P  ++ +  P ++  + LLC++  GV+VN  G
Sbjct: 743 DTSLAFAVYGAAQLNIFPIAVLDVTSPGAHSEEFLLCFNEFGVFVNGAG 791


>SB_6169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 391 NAVKMSTFNRPNLYCFVSPAHDLSCTNVGHRCGHF 287
           NA+      +P++  FV PA  + CT  GH   H+
Sbjct: 81  NAMSDLRLEQPSVDAFVGPACSVGCTAGGHLSAHW 115


>SB_27126| Best HMM Match : ANF_receptor (HMM E-Value=0.015)
          Length = 189

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 391 NAVKMSTFNRPNLYCFVSPAHDLSCTNVGHRCGHF 287
           NA+      +P++  FV PA  + CT  GH   H+
Sbjct: 33  NAMSDLWLEQPSVDAFVGPACSVGCTAGGHLSAHW 67


>SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)
          Length = 504

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = -1

Query: 275 VLYFC*PSVSVNID--AFIVIAQKQLHAVRVWKRYNAMWNN*SMFW--NINIIYCGSVQI 108
           +L +C P    N D   F+  +Q +   +RV +RY+   NN    W  ++   +C    +
Sbjct: 280 MLDYC-PKTKCNTDFQIFLTDSQPKRGDIRVTRRYSIQGNNRCDLWPGSVKATHCNEFIV 338

Query: 107 NSMEAICRTINYFQSCTFFN 48
             +  +   I Y  + T+ N
Sbjct: 339 YQLHPVNCYIRYCGAETYLN 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,383,730
Number of Sequences: 59808
Number of extensions: 538347
Number of successful extensions: 1108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)