Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060178.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.6  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    24   1.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.3  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 3   ARGELQHRPLLVDLTIEEGTRLKVIYGSADGFHAVDLD 116
           A G+L      +DL +  GT+ + I+GS++   A+DLD
Sbjct: 84  ASGDLSLGQKTIDLELI-GTQAEGIFGSSEECVALDLD 120


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 3   ARGELQHRPLLVDLTIEEGTRLKVIYGSADGFHAVDLD 116
           A G+L      +DL +  GT+ + I+GS++   A+DLD
Sbjct: 52  ASGDLSLGQKTIDLELI-GTQAEGIFGSSEECVALDLD 88


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 33  LVDLTIEEGTRLKVIYGSADGFHAVDLDTATVYDIYIPK 149
           +V +  E+G  L V + S D FH +   T+  +D Y PK
Sbjct: 202 MVYIADEKGEGLIVYHNSDDSFHRL---TSNTFD-YDPK 236


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 33  LVDLTIEEGTRLKVIYGSADGFHAVDLDTATVYDIYIPK 149
           +V +  E+G  L V + S D FH +   T+  +D Y PK
Sbjct: 202 MVYIADEKGEGLIVYHNSDDSFHRL---TSNTFD-YDPK 236


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 33  LVDLTIEEGTRLKVIYGSADGFHAVDLDTATVYDIYIPK 149
           +V +  E+G  L V + S D FH +   T+  +D Y PK
Sbjct: 202 MVYIADEKGEGLIVYHNSDDSFHRL---TSNTFD-YDPK 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,085
Number of Sequences: 438
Number of extensions: 5472
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)