Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060178.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26710.1 68414.m03253 expressed protein                             28   5.0  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    27   8.8  
At5g51560.1 68418.m06393 leucine-rich repeat transmembrane prote...    27   8.8  
At5g17720.1 68418.m02077 hydrolase, alpha/beta fold family prote...    27   8.8  
At4g10280.1 68417.m01690 expressed protein                             27   8.8  
At3g54830.1 68416.m06074 amino acid transporter family protein b...    27   8.8  

>At1g26710.1 68414.m03253 expressed protein
          Length = 168

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 251 RRVSKNIVL-QWGEMPTSVAYIGTGQIMGWGNKAIEIRSVESGHLDGV 391
           R +S NI L + G       YIGTG+    GNK   I SV    + G+
Sbjct: 59  RDISSNIGLGEVGSQEMHHTYIGTGEDSSLGNKQDNINSVPRKVIRGI 106


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 144 PKHGSIIP-HCIVPLPNSNGVQLLLCYDNEGVYVNTYGGLAKI*YFSGVKCPHRWPTLVQ 320
           P +GS     C    PNS+   ++   +  GV V+    L ++   SG    H WPT++ 
Sbjct: 146 PPNGSETKKRCTWVTPNSDPCYIVFHDEEWGVPVHDDKRLFELLVLSGALAEHTWPTILS 205

Query: 321 DK 326
            +
Sbjct: 206 KR 207


>At5g51560.1 68418.m06393 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 680

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 477 EEPPFAEEKNTLSLRSHKNLS-LCAFLCIKTPSRCPLSTD 361
           EEP F +  N L+   H+NLS L  F C +    C L  D
Sbjct: 446 EEPEFLKGLNMLASLKHENLSKLRGFCCSRGRGECFLIYD 485


>At5g17720.1 68418.m02077 hydrolase, alpha/beta fold family protein
           low similarity to SP|P27747 Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system
           (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
           eutrophus}, SP|P24640 Lipase 3 precursor (EC 3.1.1.3)
           (Triacylglycerol lipase) {Moraxella sp}; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 443

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 449 FFSSAKGGSSCQIYFMTLNKPEWPTGS 529
           +F+ +KGG+SC    +   K  WP  S
Sbjct: 269 YFADSKGGASCAALDVVAKKKLWPPAS 295


>At4g10280.1 68417.m01690 expressed protein
          Length = 140

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 296 WAFHPTEVLYFC*PSVSVNIDAF 228
           W F  TE +YF    V VN+D +
Sbjct: 79  WEFKKTETIYFMEGKVKVNVDGY 101


>At3g54830.1 68416.m06074 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 546

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +3

Query: 150 HGSIIPHCIVPLPNSNGVQLLLCYDNEGVYVNTYGGLAKI*YFSGV 287
           H    P  +  LP S G+    CY   GV+ N Y  +AK   FS V
Sbjct: 324 HSKGTPLNLATLPVSVGLYGY-CYSGHGVFPNIYTSMAKPSQFSAV 368


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,265,154
Number of Sequences: 28952
Number of extensions: 368441
Number of successful extensions: 787
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)