Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060177.seq
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 31 0.14
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 29 0.55
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 28 1.3
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 27 1.7
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 27 2.9
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 25 6.8
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 25 6.8
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 6.8
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 25 6.8
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 25 9.0
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 31.1 bits (67), Expect = 0.14
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +1
Query: 310 SRQRARSNRTADILFEQF*TRNFSRHVGLLANYFGPL*TFHEKRKTAA 453
S + A SN D LF TR+ V LLA + F+EKRKT A
Sbjct: 437 SIRTAVSNTQVDQLFHVRHTRSLEHSVSLLAEMTKQINLFYEKRKTLA 484
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 29.1 bits (62), Expect = 0.55
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = -1
Query: 514 HKFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNNLQAAQHVLRNFSFKIVQREYL 341
H F++ P+D V +R + D ++ VS EM+ A + ++ + + + ++Y+
Sbjct: 341 HSFVISPNDIVYVRERNQIDHVKYLVSKEMYAEAIDAVKKLPEIPPSLQISELAKKYI 398
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = -2
Query: 573 TRHQFGGHAXMHYSVHISXHTNLLYHHPTASLLGL--NTLAMCSSFPFLMKCSKRPKII 403
T H FG S IS T+L YH +L + MCS+ P L+ PK I
Sbjct: 192 TVHSFGKVELSPPSTPISDRTDLSYHKKLNTLFTAYWDLQCMCSNPPKLLASDTLPKFI 250
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 511 KFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNNLQAAQHVL 380
K+ + +D+V +G ++ VS+ AAQN+ +AAQ+VL
Sbjct: 27 KYGLKSNDAVLASESQMGIYKEPCVSYSAGGAAQNSCRAAQYVL 70
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -1
Query: 520 LXHKFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQN 407
L FIV P S R++ GDV F +S E + N
Sbjct: 222 LQRGFIVLPKSSTPRRIKENGDVFDFEISKEDMEKLYN 259
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 266 DDNVRKVLEQIDAVVPVSV-RVQTGRQIFSLNNFEREISQDMLGCLQIILGRFEHFMRNG 442
D + K+ I+ SV R F+ NN +Q++L C++I+LG+ E
Sbjct: 85 DSEINKITHIINFAAESSVDRSFIDPLYFTKNNILS--TQNLLECVRILLGKKEELRNRL 142
Query: 443 KLLHIA 460
+H++
Sbjct: 143 NFVHVS 148
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 6.8
Identities = 20/86 (23%), Positives = 36/86 (41%)
Frame = -1
Query: 577 QNEAPIRXARXDALFCAHKLXHKFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNNLQ 398
Q PI A A+F + L K P + H+G + +V + +KA +NL+
Sbjct: 164 QQGRPIEEAYEAAVFKINMLKKKLESPEIPLPEQKKVHLGYEAKSNVGEDGYKAFVSNLK 223
Query: 397 AAQHVLRNFSFKIVQREYLPSGLNAH 320
+H+ F+ V + + + H
Sbjct: 224 --EHIFNGDIFQAVPSQRIARRTDLH 247
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Frame = +3
Query: 243 STGERRASTIT-------SVKCWSKSTRWFPSACAFK 332
S GER+ TI+ ++ CW STR S+ AF+
Sbjct: 310 SGGERKRVTISEGFATRPTIACWDNSTRGLDSSTAFE 346
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 45 ARRVWRVVSPSPYSSGIPIRIVRKRYVVHRAGRDRYAR 158
A R W +P+P S +P + +V+ + RD+Y R
Sbjct: 84 ANRYW---NPNPLSHPLPTNALSDEHVMEKYIRDKYER 118
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 170 ADLQTRIAVTSRSMHDISFTYDSD 99
+D+ T + +TS+S+H+I DSD
Sbjct: 465 SDVFTTLKITSKSLHNIDEHSDSD 488
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,801
Number of Sequences: 5004
Number of extensions: 52320
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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