Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060177.seq
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 31 0.57
08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151 31 0.75
09_02_0507 + 10044073-10044576 30 1.7
05_05_0173 + 22956927-22958615 30 1.7
06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792... 28 5.3
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628... 28 5.3
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495 28 7.0
11_01_0214 - 1682731-1682744,1683597-1683640,1684284-1684372,168... 28 7.0
10_08_0550 + 18699187-18699272,18699298-18699544 28 7.0
05_07_0012 + 27041475-27042476 28 7.0
04_03_0209 + 12687060-12687638 28 7.0
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 27 9.2
11_08_0026 + 27752519-27755441,27755538-27755923 27 9.2
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464... 27 9.2
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +2
Query: 239 VQHRRTTGIDDNVRKVLEQIDAVVPVSVR-VQTGRQIFSLNNFEREISQDMLGCLQIILG 415
+ HR T DD V ++ +VP S++ + G Q+ ++N ++ ++ C+ +++
Sbjct: 237 IAHRITDEADDVADAVYSVLNTIVPTSLQLIAMGHQMVTINPLLSVVAATVIPCMWLVIA 296
Query: 416 RFEHFMRN-GKLLHIA 460
+R K HI+
Sbjct: 297 SLGRRLRQISKEAHIS 312
>08_02_1617 - 28265252-28265354,28266546-28266608,28266943-28267151
Length = 124
Score = 31.1 bits (67), Expect = 0.75
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 96 PIRIVRKRYVVHRAGRDRYARLKIGSCTFDEAVKMIDAG 212
P R V+KR + H+ R +K +DE VK+ DAG
Sbjct: 6 PHRKVKKRRLSHKTARRGKFLVKADDAVYDELVKLADAG 44
>09_02_0507 + 10044073-10044576
Length = 167
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -1
Query: 529 AHKLXHKFIVPPSDSVAIRVE-HVGDVQQFSVSHEMFKAAQNNL 401
+HK H+F+ P +D+VAI + ++G+V F + + AQ +L
Sbjct: 5 SHKTLHEFVAPSADNVAIGPQINLGEV-DFDLKSSLITMAQASL 47
>05_05_0173 + 22956927-22958615
Length = 562
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 310 NHRVDLLQHFTDVIVDARRSPVLNQWERLLMESP 209
+ R+DLLQHF D+ R + ++ R++ SP
Sbjct: 436 SERIDLLQHFVDLASTERLASAVSDLRRMVRPSP 469
>06_03_0590 +
22574985-22578018,22578125-22578469,22579171-22579217,
22579450-22579573,22579622-22579686
Length = 1204
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 623 KSLWLKRNKFFXRLPTKRG 567
++LWLK NKFF +P++ G
Sbjct: 492 EALWLKNNKFFGPIPSEIG 510
>01_06_1200 -
35362412-35362432,35362526-35362715,35362799-35362899,
35362985-35363116,35363204-35363302,35363493-35363568,
35363649-35363941,35364032-35364160,35364332-35364480,
35364562-35364633,35364728-35364776,35365039-35365107,
35365201-35365256,35365357-35365429,35365508-35365584,
35365847-35365934,35366086-35366259,35366358-35366473,
35366681-35366984,35367084-35367146,35367224-35367286,
35367393-35367506,35368672-35368675,35368894-35368952,
35369024-35369098,35369691-35369798,35372331-35372792
Length = 1071
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 260 PSFAGAEPMGKAFDGIARVYHLD 192
PSFA AE + K+F+G A+ LD
Sbjct: 898 PSFADAEKVQKSFEGAAKARRLD 920
>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
Length = 1086
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -1
Query: 433 HEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSG-LNA--HADGNHRVDLLQHFTDVIVD 263
H + A NL + N F+ + EY+P+G L A H++G ++ L+ D+++D
Sbjct: 846 HVLRMARHRNLIKILNTCSNLDFRALVLEYMPNGSLEALLHSEGRMQLGFLER-VDIMLD 904
>11_01_0214 -
1682731-1682744,1683597-1683640,1684284-1684372,
1684461-1684505,1685044-1685073,1685189-1685296,
1685380-1685465,1686180-1686267,1687494-1687694,
1687885-1687960,1688040-1688089,1688180-1688242,
1688322-1688398,1688893-1688953,1689377-1689417,
1690005-1690086
Length = 384
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/98 (22%), Positives = 40/98 (40%)
Frame = -2
Query: 525 ISXHTNLLYHHPTASLLGLNTLAMCSSFPFLMKCSKRPKIICKQPNMS*EISRSKLFKEN 346
I + +Y H L +NT + + CS P +P +S ++ + + K N
Sbjct: 250 ILIYQTFIYPHIVKVLGIINTSRVAVILSMAILCSYPPMTYLSRPWLSIVVNIASMLKNN 309
Query: 345 ICRPV*TRTLTGTTASICSNTLRTLSSMPVVRRC*TNG 232
+ + T + CS L+ +S+P +R NG
Sbjct: 310 FVCKLPVYMVVQVTINTCSFILQN-NSVPQHQRATANG 346
>10_08_0550 + 18699187-18699272,18699298-18699544
Length = 110
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 241 SAPANDGHRR*RP*SVGANRRGGSRQRARSNRTADIL 351
+AP +G R RP GA GG + R RT +L
Sbjct: 27 AAPRREGRGRRRPAHRGAGELGGEQARPGQRRTPGVL 63
>05_07_0012 + 27041475-27042476
Length = 333
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 1 RHEIIYNYYAKYNEVHDVYGESYHH 75
R I+YN K+ EV D + ++Y H
Sbjct: 209 RKMIVYNIATKFREVSDYFRQNYQH 233
>04_03_0209 + 12687060-12687638
Length = 192
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +3
Query: 225 SLSHWFSTGERRASTITSVKCWSKSTRWFPS---ACAF-KPDGRYSL*TILNEKFLKTCW 392
+++++ S G RAS +V+ W+ RW+ + ACA K G Y + K L
Sbjct: 112 AVTYFLSDGGSRASPEDAVRLWADERRWYDAGARACAAGKQCGDYEIMVQPASKQLGCAV 171
Query: 393 AAC 401
A C
Sbjct: 172 AVC 174
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 315 TGTTASICSNTLRTLSSMPVVRR 247
TG TA+ CS + LS +PV++R
Sbjct: 520 TGATAAACSAISQALSDLPVMKR 542
>11_08_0026 + 27752519-27755441,27755538-27755923
Length = 1102
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -1
Query: 433 HEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSG-LNA--HADGNHRVDLLQHFTDVIVD 263
H + A NL + N F+ + EY+P+G L A H++G ++ L+ D+++D
Sbjct: 850 HVLRMARHRNLIKILNTCTNLDFRALILEYMPNGSLEALLHSEGRMQLGFLER-VDIMLD 908
>01_06_0363 -
28745581-28745709,28746043-28746114,28746373-28746417,
28746523-28746618,28747029-28747080,28747232-28747305,
28747386-28747502,28747844-28747930,28748186-28748281,
28748508-28748654
Length = 304
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 40 EVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVT-AMR-V*RSAVAPLTKRSR 198
+V D+Y E H R+ EY ESY +S IE A+R V +S + + KRS+
Sbjct: 251 KVKDLYNE-LHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSFLHKIYKRSK 304
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,854,983
Number of Sequences: 37544
Number of extensions: 345862
Number of successful extensions: 1040
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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