Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060177.seq
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2)                  29   2.3  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7)            27   9.4  
SB_16747| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = +2

Query: 248  RRTTGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFS--LNNFEREISQ-DMLGCLQIILGR 418
            +R   + +N  +  +Q+D VVPV+       Q+F   L N E+ +S  D + C +  L R
Sbjct: 1997 QRWKSVKENFDEKKDQLDEVVPVAKAYHDLSQMFQEWLQNAEKYLSTLDPISCDEKSLAR 2056

Query: 419  FEHFMRNGKLLHIANVFNPNSDAV 490
             E  +    +L  A    PN D++
Sbjct: 2057 EERSLEG--ILATAEDHKPNLDSL 2078


>SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2)
          Length = 376

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -1

Query: 265 DARRSPVLNQWERLLMESPASIILTASSKVQLPIFKRA*RSRPALCTTYRLRTILIGIPE 86
           D     V +  ER +   P S IL +    +L  FK     +  +CTT R ++  IGI E
Sbjct: 240 DITEISVTDALERTITRQPTSRILASWCPNKLEPFKHRDTGKEKVCTTKRRKSFDIGILE 299


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 474 GLNTLAMCSSFP-FLMKCSKRPKIICKQPN 388
           G+ ++A C   P  LM C+K  +I+C  PN
Sbjct: 263 GILSIAWCPQDPDLLMSCAKDNRILCWNPN 292


>SB_32080| Best HMM Match : Plasmid_stabil (HMM E-Value=5.7)
          Length = 284

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 303 RWFPSACAFKPDGRYSL 353
           RW PS   F+PDG+Y+L
Sbjct: 33  RWRPSTDFFEPDGQYNL 49


>SB_16747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 303 RWFPSACAFKPDGRYSL 353
           RW PS   F+PDG+Y+L
Sbjct: 33  RWRPSTDFFEPDGQYNL 49


>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -2

Query: 468 NTLAMCSSFPFLMKCSKRPKIICKQPNMS*EISRSKLFKENICRPV*TRTLTGTTASICS 289
           +T ++C S    M    R  I+C+    +  +SRS + + ++ R        G T+S+C 
Sbjct: 361 HTQSVCRSVIHRMSVD-RSYIVCQSIGYTSYVSRSVIHRLSVDRSYTVSPSIGHTSSVCR 419

Query: 288 NTLRTLS 268
           + +  LS
Sbjct: 420 SVIHRLS 426


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 396 ACKLFWAALNIS*ETENCCTSPTCS 470
           AC+ ++ A NI    + CC  PTC+
Sbjct: 633 ACRYYYVANNIGECYDLCCQQPTCN 657


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,678,093
Number of Sequences: 59808
Number of extensions: 413534
Number of successful extensions: 1125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)