Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060177.seq
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   3.6  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   3.6  
Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical...    28   6.3  
U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical p...    27   8.3  
AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +2

Query: 197  DDRRGRFHQKPFPLVQHRRTTGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFE 367
            D +  R  + PFP + + +T  +D N+R+V   +++  PV V +      FS+NN E
Sbjct: 2461 DVKASRPLKDPFPEISNLQTFDVDVNLRRVYFVVES--PVGVNISW----FSMNNAE 2511


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +2

Query: 197  DDRRGRFHQKPFPLVQHRRTTGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFE 367
            D +  R  + PFP + + +T  +D N+R+V   +++  PV V +      FS+NN E
Sbjct: 2461 DVKASRPLKDPFPEISNLQTFDVDVNLRRVYFVVES--PVGVNISW----FSMNNAE 2511


>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = -2

Query: 177 CNCRSSNAHSGHVPLYARHIVYVRF**VFLNYTVMVIRLAIHVVHLIVFSIIIVNYL 7
           C  R SN+   H+ +     + ++   VF  + + ++ +     HL++FS+ I++YL
Sbjct: 77  CISRESNSTKAHLGIQNDENL-MKIVAVFTLFLIYILHILQQTFHLLLFSLAIMSYL 132


>AC024776-22|AAK68478.3|  701|Caenorhabditis elegans Hypothetical
           protein Y41D4B.4 protein.
          Length = 701

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -1

Query: 376 NFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVD-----ARRSPVLNQWERLLMES 212
           N   K+++   L +G++ + D NH  +L Q   DVI +     A    +LN++ RL    
Sbjct: 503 NVQAKLLKVHVLVNGVSRNPDANHTKELFQLLEDVITEHPHILAAYCFLLNEYARLKNSD 562

Query: 211 PASIIL 194
             + IL
Sbjct: 563 KCNEIL 568


>U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical
           protein T20D4.9 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 174 CTFDEAVKMIDAGDSIKSLSHWFS 245
           CT DE VKM+   D++K +  WFS
Sbjct: 303 CTQDE-VKMMGDSDAVKPIDGWFS 325


>U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical
           protein T28A11.17 protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 174 CTFDEAVKMIDAGDSIKSLSHWFS 245
           CT DE VKM+   D++K +  WFS
Sbjct: 337 CTQDE-VKMMGDSDAVKPIDGWFS 359


>AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical
           protein C17B7.8 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 174 CTFDEAVKMIDAGDSIKSLSHWFS 245
           CT DE VKM+   D++K +  WFS
Sbjct: 379 CTQDE-VKMMGDSDAVKPIDGWFS 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,496,259
Number of Sequences: 27780
Number of extensions: 302484
Number of successful extensions: 909
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)