Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060177.seq
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    28   0.086
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   5.6  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      22   5.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 27.9 bits (59), Expect = 0.086
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 283 FTDVIVDARRSPV-LNQWERLLMESPASIILTASSKVQ 173
           FT+ +V+   SP+ LN+   +L  SPA IIL   SK +
Sbjct: 2   FTENVVEELLSPLTLNRITHILANSPAIIILGQDSKAK 39


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 271 IVDARRSPV-LNQWERLLMESPASIILTASSKVQ 173
           +V+   SP+ LN+   +L  SPA IIL   SK +
Sbjct: 44  VVEELLSPLTLNRITHILANSPAIIILGQDSKAK 77


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 58   GESYHHHRIVQEYLSESYVNDMSCIER 138
            G S  H R + E++  S  +D S +ER
Sbjct: 1321 GSSEDHRRPLSEHIYSSIDSDYSTLER 1347


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
          preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 5/20 (25%), Positives = 15/20 (75%)
 Frame = -2

Query: 60 AIHVVHLIVFSIIIVNYLVP 1
          A H++ +++FS +++  ++P
Sbjct: 8  ATHLITVLLFSFVVILLIIP 27


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 5/20 (25%), Positives = 15/20 (75%)
 Frame = -2

Query: 60 AIHVVHLIVFSIIIVNYLVP 1
          A H++ +++FS +++  ++P
Sbjct: 8  ATHLITVLLFSFVVILLIIP 27


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 553 ARXDALFCAHKLXHKFIVPPSDSV 482
           A+ D L C + L HK  VPP   +
Sbjct: 449 AQDDGL-CPYTLKHKIRVPPGTPI 471


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +2

Query: 359  NFEREISQDMLGCLQIILGRFEHFMRNGKLL 451
            NF+ + + D +G    +  + EHF+ +  L+
Sbjct: 1600 NFDHDSTNDFVGPKNCLFRKPEHFVASYALI 1630


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 237 WFSTGERRASTITSVKCWSKSTRWFPSACAFKP 335
           +F TG   A  ITS+      +     AC F P
Sbjct: 868 YFGTGNNVALRITSMSVTISLSASVTIACLFSP 900


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,152
Number of Sequences: 438
Number of extensions: 3590
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)